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We describe the TreePM method for carrying out large N-Body simulations to study formation and evolution of the large scale structure in the Universe. This method is a combination of Barnes and Hut tree code and Particle-Mesh code. It…

Astrophysics · Physics 2009-10-31 J. S. Bagla

In this paper we study the Steiner tree problem over a dynamic set of terminals. We consider the model where we are given an $n$-vertex graph $G=(V,E,w)$ with positive real edge weights, and our goal is to maintain a tree which is a good…

Data Structures and Algorithms · Computer Science 2016-06-27 Jakub Łącki , Jakub Oćwieja , Marcin Pilipczuk , Piotr Sankowski , Anna Zych

Treemaps have been widely applied to the visualization of hierarchical data. A treemap takes a weighted tree and visualizes its leaves in a nested planar geometric shape, with sub-regions partitioned such that each sub-region has an area…

Graphics · Computer Science 2023-09-01 Mehdi Behroozi , Reyhaneh Mohammadi , Cody Dunne

An improved implementation of an N-body code for simulating collisionless cosmological dynamics is presented. TPM (Tree-Particle-Mesh) combines the PM method on large scales with a tree code to handle particle-particle interactions at small…

Astrophysics · Physics 2009-11-07 Paul Bode , Jeremiah P. Ostriker

In this paper, we address the scenario where nodes with sensor data are connected in a tree network, and every node wants to compute a given symmetric Boolean function of the sensor data. We first consider the problem of computing a…

Information Theory · Computer Science 2010-05-03 Hemant Kowshik , P. R. Kumar

Online learning algorithms have become a ubiquitous tool in the machine learning toolbox and are frequently used in small, resource-constraint environments. Among the most successful online learning methods are Decision Tree (DT) ensembles.…

Machine Learning · Computer Science 2021-12-08 Sebastian Buschjäger , Sibylle Hess , Katharina Morik

Tensor networks are powerful factorization techniques which reduce resource requirements for numerically simulating principal quantum many-body systems and algorithms. The computational complexity of a tensor network simulation depends on…

Data Structures and Algorithms · Computer Science 2019-03-06 Eugene F. Dumitrescu , Allison L. Fisher , Timothy D. Goodrich , Travis S. Humble , Blair D. Sullivan , Andrew L. Wright

A novel code for the approximate computation of long-range forces between N mutually interacting bodies is presented. The code is based on a hierarchical tree of cubic cells and features mutual cell-cell interactions which are calculated…

Astrophysics · Physics 2009-11-07 Walter Dehnen

An optimal data partitioning in parallel & distributed implementation of clustering algorithms is a necessary computation as it ensures independent task completion, fair distribution, less number of affected points and better & faster…

Artificial Intelligence · Computer Science 2016-09-21 Saraswati Mishra , Avnish Chandra Suman

In this paper, I will introduce a fast and novel clustering algorithm based on Gaussian distribution and it can guarantee the separation of each cluster centroid as a given parameter, $d_s$. The worst run time complexity of this algorithm…

Databases · Computer Science 2019-10-22 Yuan-Yen Tai

The wavelet tree (Grossi et al. [SODA, 2003]) and wavelet matrix (Claude et al. [Inf. Syst., 47:15--32, 2015]) are compact indices for texts over an alphabet $[0,\sigma)$ that support rank, select and access queries in $O(\lg \sigma)$ time.…

Data Structures and Algorithms · Computer Science 2017-11-13 Johannes Fischer , Florian Kurpicz , Marvin Löbel

We present preliminary results on the parallelization of a Tree-Code for evaluating gravitational forces in N-body astrophysical systems. Our HPF/CRAFT implementation on a CRAY T3E machine attained an encouraging speed-up behavior, reaching…

Astrophysics · Physics 2009-10-31 Roberto Capuzzo-Dolcetta , Paolo Miocchi

We introduce an improved structure of distance sensitivity oracle (DSO). The task is to pre-process a non-negatively weighted graph so that a data structure can quickly answer replacement path length for every triple of source, terminal and…

Data Structures and Algorithms · Computer Science 2016-05-17 Ran Duan , Tianyi Zhang

The method of regularized stokeslets is extensively used in biological fluid dynamics due to its conceptual simplicity and meshlessness. This simplicity carries a degree of cost in computational expense and accuracy because the number of…

Fluid Dynamics · Physics 2018-02-14 David J. Smith

The accuracy and complexity of machine learning algorithms based on kernel optimization are limited by the set of kernels over which they are able to optimize. An ideal set of kernels should: admit a linear parameterization (for…

Machine Learning · Computer Science 2020-06-16 Brendon K. Colbert , Matthew M. Peet

We would like to congratulate Lee, Nadler and Wasserman on their contribution to clustering and data reduction methods for high $p$ and low $n$ situations. A composite of clustering and traditional principal components analysis, treelets is…

Applications · Statistics 2008-07-28 Catherine Tuglus , Mark J. van der Laan

We present a simplified version of the threshold dynamics algorithm given in the work of Esedoglu and Otto (2015). The new version still allows specifying N-choose-2 possibly distinct surface tensions and N-choose-2 possibly distinct…

Numerical Analysis · Mathematics 2018-07-19 Tiago Salvador , Selim Esedoglu

The large sparse linear systems arising from the finite element or finite difference discretization of elliptic PDEs can be solved directly via, e.g., nested dissection or multifrontal methods. Such techniques reorder the nodes in the grid…

Numerical Analysis · Mathematics 2013-02-26 Adrianna Gillman , Per-Gunnar Martinsson

Gravitational $N$-body simulations calculate numerous interactions between particles. The tree algorithm reduces these calculations by constructing a hierarchical oct-tree structure and approximating gravitational forces on particles. Over…

Instrumentation and Methods for Astrophysics · Physics 2024-01-09 Tomoyuki Tokuue , Tomoaki Ishiyama

Density peaks clustering has become a nova of clustering algorithm because of its simplicity and practicality. However, there is one main drawback: it is time-consuming due to its high computational complexity. Herein, a density peaks…

Machine Learning · Statistics 2022-07-21 Yunxiao Shan , Shu Li , Fuxiang Li , Yuxin Cui , Shuai Li , Ming Zhou , Xiang Li