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Graph-based machine learning methods are useful tools in the identification and prediction of variation in genetic data. In particular, the comprehension of phenotypic effects at the cellular level is an accelerating research area in…

Quantitative Methods · Quantitative Biology 2024-12-06 Nandini Gadhia , Michalis Smyrnakis , Po-Yu Liu , Damer Blake , Melanie Hay , Anh Nguyen , Dominic Richards , Dong Xia , Ritesh Krishna

Daily internet communication relies heavily on tree-structured graphs, embodied by popular data formats such as XML and JSON. However, many recent generative (probabilistic) models utilize neural networks to learn a probability distribution…

Machine Learning · Computer Science 2024-08-20 Milan Papež , Martin Rektoris , Tomáš Pevný , Václav Šmídl

Paper proposes a model of large networks based on a random preferential attachment graph with addition of complete subgraphs (cliques). The proposed model refers to models of random graphs following the nonlinear preferential attachment…

Social and Information Networks · Computer Science 2019-04-05 E. B. Yudin

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

Multiplex networks allow us to study a variety of complex systems where nodes connect to each other in multiple ways, for example friend, family, and co-worker relations in social networks. Link prediction is the branch of network analysis…

Social and Information Networks · Computer Science 2020-08-20 Michele Coscia , Michael Szell

The study of network formation is pervasive in economics, sociology, and many other fields. In this paper, we model network formation as a `choice' that is made by nodes in a network to connect to other nodes. We study these `choices' using…

Social and Information Networks · Computer Science 2022-08-30 Harsh Gupta , Mason A. Porter

The increasing prevalence of relational data describing interactions among a target population has motivated a wide literature on statistical network analysis. In many applications, interactions may involve more than two members of the…

Methodology · Statistics 2021-11-03 Kathryn Turnbull , Simón Lunagómez , Christopher Nemeth , Edoardo Airoldi

Network graphs have become a popular tool to represent complex systems composed of many interacting subunits; especially in neuroscience, network graphs are increasingly used to represent and analyze functional interactions between neural…

Information Theory · Computer Science 2015-11-24 Patricia Wollstadt , Ulrich Meyer , Michael Wibral

In an increasingly interconnected world, understanding and summarizing the structure of these networks becomes increasingly relevant. However, this task is nontrivial; proposed summary statistics are as diverse as the networks they…

Statistics Theory · Mathematics 2020-04-15 Lee M. Gunderson , Gecia Bravo-Hermsdorff

Signed networks, i.e., networks with positive and negative edges, commonly arise in various domains from social media to epidemiology. Modeling signed networks has many practical applications, including the creation of synthetic data sets…

Quantitative Methods · Quantitative Biology 2022-11-18 Angelina Brilliantova , Hannah Miller , Ivona Bezáková

Graphs are ubiquitous and ever-present data structures that have a wide range of applications involving social networks, knowledge bases and biological interactions. The evolution of a graph in such scenarios can yield important insights…

Data Structures and Algorithms · Computer Science 2019-02-15 Lefteris Zervakis , Vinay Setty , Christos Tryfonopoulos , Katja Hose

We present GraphMoE, a novel neural network-based approach to learning generative models for random graphs. The neural network is trained to match the distribution of a class of random graphs by way of a moment estimator. The features used…

Machine Learning · Statistics 2022-04-19 Vittorio Loprinzo , Laurent Younes

Online social networks are a dominant medium in everyday life to stay in contact with friends and to share information. In Twitter, users can connect with other users by following them, who in turn can follow back. In recent years,…

Social and Information Networks · Computer Science 2022-05-06 Christoph Schweimer , Christine Gfrerer , Florian Lugstein , David Pape , Jan A. Velimsky , Robert Elsässer , Bernhard C. Geiger

How information spreads through a social network? Can we assume, that the information is spread only through a given social network graph? What is the correct way to compare the models of information flow? These are the basic questions we…

Social and Information Networks · Computer Science 2016-11-30 Andrzej Pacuk , Piotr Sankowski , Karol Wegrzycki , Piotr Wygocki

One of the first steps in applications of statistical network analysis is frequently to produce summary charts of important features of the network. Many of these features take the form of sequences of graph statistics counting the number…

Statistics Theory · Mathematics 2025-02-14 Jonathan R. Stewart

In many information networks, data items -- such as updates in social networks, news flowing through interconnected RSS feeds and blogs, measurements in sensor networks, route updates in ad-hoc networks -- propagate in an uncoordinated…

Databases · Computer Science 2012-02-01 Dóra Erdös , Vatche Ishakian , Andrei Lapets , Evimaria Terzi , Azer Bestavros

Many real world networks contain a statistically surprising number of certain subgraphs, called network motifs. In the prevalent approach to motif analysis, network motifs are detected by comparing subgraph frequencies in the original…

Social and Information Networks · Computer Science 2014-11-25 Anatol E. Wegner

Random intersection graphs model networks with communities, assuming an underlying bipartite structure of groups and individuals, where these groups may overlap. Group memberships are generated through the bipartite configuration model.…

Probability · Mathematics 2026-01-14 Remco van der Hofstad , Julia Komjathy , Viktoria Vadon

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

Network systems have become a ubiquitous modeling tool in many areas of science where nodes in a graph represent distributed processes and edges between nodes represent a form of dynamic coupling. When a network topology is already known…

Adaptation and Self-Organizing Systems · Physics 2019-05-30 Donatello Materassi , Murti V. Salapaka
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