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CCS can be considered as a most natural extension of finite state automata in which interaction is made possible thanks to parallel composition. We propose here a similar extension for top-down tree automata. We introduce a parallel…

Logic in Computer Science · Computer Science 2013-06-10 Thomas Ehrhard , Ying Jiang

In evolutionary biology, networks are becoming increasingly used to represent evolutionary histories for species that have undergone non-treelike or reticulate evolution. Such networks are essentially directed acyclic graphs with a leaf set…

Populations and Evolution · Quantitative Biology 2023-08-23 Katharina T. Huber , Leo van Iersel , Vincent Moulton , Guillaume Scholz

Connectivity query processing is a fundamental problem in graph processing. Given an undirected graph and two query vertices, the problem aims to identify whether they are connected via a path. Given frequent edge updates in real graph…

Databases · Computer Science 2026-01-27 Lantian Xu , Junhua Zhang , Dong Wen , Lu Qin , Ying Zhang , Xuemin Lin

Generating explanations for neural networks has become crucial for their applications in real-world with respect to reliability and trustworthiness. In natural language processing, existing methods usually provide important features which…

Computation and Language · Computer Science 2020-05-19 Hanjie Chen , Guangtao Zheng , Yangfeng Ji

Microservice systems expose rich telemetry streams, including metrics, logs, and distributed traces. Existing performance anomaly detection methods increasingly model these systems as graphs, where nodes represent services and edges…

Software Engineering · Computer Science 2026-05-26 Yunjian Ma

We introduce top trees as a design of a new simpler interface for data structures maintaining information in a fully-dynamic forest. We demonstrate how easy and versatile they are to use on a host of different applications. For example, we…

Data Structures and Algorithms · Computer Science 2007-05-23 Stephen Alstrup , Jacob Holm , Kristian de Lichtenberg , Mikkel Thorup

Distributed computing has become a common practice nowadays, where the recent focus has been given to the usage of smart networking devices with in-network computing capabilities. State-of-the-art switches with near-line rate computing and…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-13 Raz Segal , Chen Avin , Gabriel Scalosub

When programming network functions, changes within a packet tend to have consequences---side effects which must be accounted for by network programmers or administrators via arbitrary logic and an innate understanding of dependencies.…

Networking and Internet Architecture · Computer Science 2019-07-02 Zeeshan Lakhani , Heather Miller

Evaluating consistency in large language models (LLMs) is crucial for ensuring reliability, particularly in complex, multi-step interactions between humans and LLMs. Traditional self-consistency methods often miss subtle semantic changes in…

Artificial Intelligence · Computer Science 2025-06-18 Zhaochen Hong , Haofei Yu , Jiaxuan You

The Resource Public Key Infrastructure (RPKI) secures the Internet's routing system by defining a complex trust and validation framework for certificates, Route Origin Authorizations (ROAs), manifests, and Certificate Revocation Lists…

Cryptography and Security · Computer Science 2026-05-27 Oliver Jacobsen , Tobias Kirsch , Haya Schulmann , Niklas Vogel , Michael Waidner

Robustness verification that aims to formally certify the prediction behavior of neural networks has become an important tool for understanding model behavior and obtaining safety guarantees. However, previous methods can usually only…

Machine Learning · Computer Science 2020-12-24 Zhouxing Shi , Huan Zhang , Kai-Wei Chang , Minlie Huang , Cho-Jui Hsieh

We apply an information theoretic treatment of action potential time series measured with microelectrode arrays to estimate the connectivity of mammalian neuronal cell assemblies grown {\it in vitro}. We infer connectivity between two…

Neurons and Cognition · Quantitative Biology 2007-05-23 Luis M. A. Bettencourt , Greg J. Stephens , Michael I. Ham , Guenter W. Gross

We show that interactive protocols between a prover and a verifier, a well-known tool of complexity theory, can be used in practice to certify the correctness of automated reasoning tools. Theoretically, interactive protocols exist for all…

Logic in Computer Science · Computer Science 2023-09-07 Eszter Couillard , Philipp Czerner , Javier Esparza , Rupak Majumdar

Networks are ubiquitous in biology and computational approaches have been largely investigated for their inference. In particular, supervised machine learning methods can be used to complete a partially known network by integrating various…

Machine Learning · Computer Science 2014-04-25 Marie Schrynemackers , Louis Wehenkel , M. Madan Babu , Pierre Geurts

We develop a matrix-based approach to predict and verify indirect interactions in gene and protein regulatory networks. It is based on the approximate transitivity of indirect regulations (e.g. A regulates B and B regulates C often implies…

Quantitative Methods · Quantitative Biology 2007-11-27 Koon-Kiu Yan , Sergei Maslov , Ilya Mazo , Anton Yuryev

Online social networks are growing and becoming denser. The social connections of a given person may have very high variability: from close friends and relatives to acquaintances to people who hardly know. Inferring the strength of social…

Data Structures and Algorithms · Computer Science 2019-02-06 Polina Rozenshtein , Nikolaj Tatti , Aristides Gionis

Highly dynamic networks are characterized by frequent changes in the availability of communication links. These networks are often partitioned into several components, which split and merge unpredictably. We present a distributed algorithm…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-25 Matthieu Barjon , Arnaud Casteigts , Serge Chaumette , Colette Johnen , Yessin M. Neggaz

Rooted phylogenetic networks are often constructed by combining trees, clusters, triplets or characters into a single network that in some well-defined sense simultaneously represents them all. We review these four models and investigate…

Populations and Evolution · Quantitative Biology 2010-04-30 Leo van Iersel , Steven Kelk

In today's world, computer networks have become vulnerable to numerous attacks. In both wireless and wired networks, one of the most common attacks is man-in-the-middle attacks, within which session hijacking, context confusion attacks have…

Cryptography and Security · Computer Science 2022-02-02 Kailash Gogineni , Yongsheng Mei , Guru Venkataramani , Tian Lan

Most integrated development environments are shipped with refactoring tools. However, their refactoring operations are often known to be unreliable. As a consequence, developers have to test their code after applying an automatic…

Programming Languages · Computer Science 2016-07-11 Julien Cohen