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We present a novel and practical deep fully convolutional neural network architecture for semantic pixel-wise segmentation termed SegNet. This core trainable segmentation engine consists of an encoder network, a corresponding decoder…

Computer Vision and Pattern Recognition · Computer Science 2016-10-12 Vijay Badrinarayanan , Alex Kendall , Roberto Cipolla

Volumetric cell segmentation in fluorescence microscopy images is important to study a wide variety of cellular processes. Applications range from the analysis of cancer cells to behavioral studies of cells in the embryonic stage. Like in…

Image and Video Processing · Electrical Eng. & Systems 2022-11-29 Royden Wagner , Karl Rohr

The alignment of serial-section electron microscopy (ssEM) images is critical for efforts in neuroscience that seek to reconstruct neuronal circuits. However, each ssEM plane contains densely packed structures that vary from one section to…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Inwan Yoo , David G. C. Hildebrand , Willie F. Tobin , Wei-Chung Allen Lee , Won-Ki Jeong

We introduce a new image segmentation task, called Entity Segmentation (ES), which aims to segment all visual entities (objects and stuffs) in an image without predicting their semantic labels. By removing the need of class label…

Computer Vision and Pattern Recognition · Computer Science 2022-12-21 Lu Qi , Jason Kuen , Yi Wang , Jiuxiang Gu , Hengshuang Zhao , Zhe Lin , Philip Torr , Jiaya Jia

Cellular processes are governed by macromolecular complexes inside the cell. Study of the native structures of macromolecular complexes has been extremely difficult due to lack of data. With recent breakthroughs in Cellular electron cryo…

Quantitative Methods · Quantitative Biology 2018-06-12 Chengqian Che , Ruogu Lin , Xiangrui Zeng , Karim Elmaaroufi , John Galeotti , Min Xu

Medical image segmentation is an important step in medical image analysis. With the rapid development of convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc…

Computer Vision and Pattern Recognition · Computer Science 2019-03-08 Zaiwang Gu , Jun Cheng , Huazhu Fu , Kang Zhou , Huaying Hao , Yitian Zhao , Tianyang Zhang , Shenghua Gao , Jiang Liu

Cryo-electron tomography (Cryo-ET) is a 3D imaging technique that enables the systemic study of shape, abundance, and distribution of macromolecular structures in single cells in near-atomic resolution. However, the systematic and efficient…

Biomolecules · Quantitative Biology 2021-06-29 Kai Yi , Jianye Pang , Yungeng Zhang , Xiangrui Zeng , Min Xu

Electron microscopic connectomics is an ambitious research direction with the goal of studying comprehensive brain connectivity maps by using high-throughput, nano-scale microscopy. One of the main challenges in connectomics research is…

Computer Vision and Pattern Recognition · Computer Science 2021-04-14 Tran Minh Quan , David G. C. Hildebrand , Won-Ki Jeong

Beyond the Transformer, it is important to explore how to exploit the capacity of the MetaFormer, an architecture that is fundamental to the performance improvements of the Transformer. Previous studies have exploited it only for the…

Computer Vision and Pattern Recognition · Computer Science 2024-08-16 Beoungwoo Kang , Seunghun Moon , Yubin Cho , Hyunwoo Yu , Suk-Ju Kang

The ability to perform pixel-wise semantic segmentation in real-time is of paramount importance in mobile applications. Recent deep neural networks aimed at this task have the disadvantage of requiring a large number of floating point…

Computer Vision and Pattern Recognition · Computer Science 2016-06-08 Adam Paszke , Abhishek Chaurasia , Sangpil Kim , Eugenio Culurciello

Image segmentation is a fundamental and challenging problem in computer vision with applications spanning multiple areas, such as medical imaging, remote sensing, and autonomous vehicles. Recently, convolutional neural networks (CNNs) have…

Computer Vision and Pattern Recognition · Computer Science 2020-06-24 Ali Hatamizadeh

Biomedical image segmentation is crucial for accurately diagnosing and analyzing various diseases. However, Convolutional Neural Networks (CNNs) and Transformers, the most commonly used architectures for this task, struggle to effectively…

Image and Video Processing · Electrical Eng. & Systems 2024-12-09 Rong Zhou , Zhengqing Yuan , Zhiling Yan , Weixiang Sun , Kai Zhang , Yiwei Li , Yanfang Ye , Xiang Li , Lifang He , Lichao Sun

Purpose Automated segmentation of anatomical structures in medical image analysis is a prerequisite for autonomous diagnosis as well as various computer and robot aided interventions. Recent methods based on deep convolutional neural…

Computer Vision and Pattern Recognition · Computer Science 2020-09-22 Max-Heinrich Laves , Jens Bicker , Lüder A. Kahrs , Tobias Ortmaier

One of the most common tasks in medical imaging is semantic segmentation. Achieving this segmentation automatically has been an active area of research, but the task has been proven very challenging due to the large variation of anatomy…

Computer Vision and Pattern Recognition · Computer Science 2018-04-10 Holger R. Roth , Chen Shen , Hirohisa Oda , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

Semantic segmentation consists in classifying each pixel of an image by assigning it to a specific label chosen from a set of all the available ones. During the last few years, a lot of attention shifted to this kind of task. Many computer…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Loris Nanni , Daniela Cuza , Alessandra Lumini , Andrea Loreggia , Sheryl Brahnam

Textures and edges contribute different information to image recognition. Edges and boundaries encode shape information, while textures manifest the appearance of regions. Despite the success of Convolutional Neural Networks (CNNs) in…

Image and Video Processing · Electrical Eng. & Systems 2020-02-12 Ali Hatamizadeh , Demetri Terzopoulos , Andriy Myronenko

Electrocardiogram (ECG) delineation, the segmentation of meaningful waveform features, is critical for clinical diagnosis. Despite recent advances using deep learning, progress has been limited by the scarcity of publicly available…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Minje Park , Jeonghwa Lim , Taehyung Yu , Sunghoon Joo

In this study, we introduce EdgeSegNet, a compact deep convolutional neural network for the task of semantic segmentation. A human-machine collaborative design strategy is leveraged to create EdgeSegNet, where principled network design…

Computer Vision and Pattern Recognition · Computer Science 2019-05-13 Zhong Qiu Lin , Brendan Chwyl , Alexander Wong

In the domain of battery research, the processing of high-resolution microscopy images is a challenging task, as it involves dealing with complex images and requires a prior understanding of the components involved. The utilization of deep…

Computer Vision and Pattern Recognition · Computer Science 2025-03-19 Ganesh Raghavendran , Bing Han , Fortune Adekogbe , Shuang Bai , Bingyu Lu , William Wu , Minghao Zhang , Ying Shirley Meng

Automated medical image segmentation is becoming increasingly crucial to modern clinical practice, driven by the growing demand for precise diagnosis, the push towards personalized treatment plans, and the advancements in machine learning…

Image and Video Processing · Electrical Eng. & Systems 2023-11-13 Tan-Hanh Pham , Xianqi Li , Kim-Doang Nguyen