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Document-level relation extraction (RE) aims to identify relations between two entities in a given document. Compared with its sentence-level counterpart, document-level RE requires complex reasoning. Previous research normally completed…
Biomedical knowledge is growing in an astounding pace with a majority of this knowledge is represented as scientific publications. Text mining tools and methods represents automatic approaches for extracting hidden patterns and trends from…
Semantic annotations have to satisfy quality constraints to be useful for digital libraries, which is particularly challenging on large and diverse datasets. Confidence scores of multi-label classification methods typically refer only to…
Context information around words helps in determining their actual meaning, for example "networks" used in contexts of artificial neural networks or biological neuron networks. Generative topic models infer topic-word distributions, taking…
Most Reading Comprehension methods limit themselves to queries which can be answered using a single sentence, paragraph, or document. Enabling models to combine disjoint pieces of textual evidence would extend the scope of machine…
In this paper, we present an efficient deep learning based approach to extract technology-related topics and keywords within scientific literature, and identify corresponding technologies within patent applications. Specifically, we utilize…
Causal knowledge extraction is the task of extracting relevant causes and effects from text by detecting the causal relation. Although this task is important for language understanding and knowledge discovery, recent works in this domain…
Academic Search is a search task aimed to manage and retrieve scientific documents like journal articles and conference papers. Personalization in this context meets individual researchers' needs by leveraging, through user profiles, the…
Novel contexts may often arise in complex querying scenarios such as in evidence-based medicine (EBM) involving biomedical literature, that may not explicitly refer to entities or canonical concept forms occurring in any fact- or rule-based…
Publications in the life sciences are characterized by a large technical vocabulary, with many lexical and semantic variations for expressing the same concept. Towards addressing the problem of relevance in biomedical literature search, we…
Causal relationships form the basis for reasoning and decision-making in Artificial Intelligence systems. To exploit the large volume of textual data available today, the automatic discovery of causal relationships from text has emerged as…
Efficiently identifying keyphrases that represent a given document is a challenging task. In the last years, plethora of keyword detection approaches were proposed. These approaches can be based on statistical (frequency-based) properties…
We present a hierarchical convolutional document model with an architecture designed to support introspection of the document structure. Using this model, we show how to use visualisation techniques from the computer vision literature to…
The Internet has revolutionized healthcare by offering medical information ubiquitously to patients via web search. The healthcare status, complex medical information needs of patients are expressed diversely and implicitly in their medical…
Objective:Develop and validate an algorithm for analyzing the layout of PDF clinical documents to improve the performance of downstream natural language processing tasks. Materials and Methods: We designed an algorithm to process clinical…
Decision-making usually takes five steps: identifying the problem, collecting data, extracting evidence, identifying pro and con arguments, and making decisions. Focusing on extracting evidence, this paper presents a hybrid model that…
In the field of machine learning, data understanding is the practice of getting initial insights in unknown datasets. Such knowledge-intensive tasks require a lot of documentation, which is necessary for data scientists to grasp the meaning…
To minimize the accelerating amount of time invested in the biomedical literature search, numerous approaches for automated knowledge extraction have been proposed. Relation extraction is one such task where semantic relations between the…
Mining relationships between treatment(s) and medical problem(s) is vital in the biomedical domain. This helps in various applications, such as decision support system, safety surveillance, and new treatment discovery. We propose a deep…
Contextual retrieval is a critical technique for today's search engines in terms of facilitating queries and returning relevant information. This paper reports on the development and evaluation of a system designed to tackle some of the…