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Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

We provide a framework for modeling social network formation through conditional multinomial logit models from discrete choice and random utility theory, in which each new edge is viewed as a "choice" made by a node to connect to another…

Social and Information Networks · Computer Science 2020-05-22 Jan Overgoor , Austin R. Benson , Johan Ugander

Graph datasets are frequently constructed by a projection of a bipartite graph, where two nodes are connected in the projection if they share a common neighbor in the bipartite graph; for example, a coauthorship graph is a projection of an…

Social and Information Networks · Computer Science 2020-07-03 Austin R. Benson , Paul Liu , Hao Yin

A Markov chain is considered whose states are orderings of an underlying fixed tree and whose transitions are local "random-to-front" reorderings, driven by a probability distribution on subsets of the leaves. The eigenvalues of the…

Probability · Mathematics 2009-01-28 Anders Björner

In this paper we explore mathematical tools that can be used to relate directed and undirected random graph models to each other. We identify probability spaces on which a directed and an undirected graph model are equivalent, and…

Probability · Mathematics 2025-03-03 Mike van Santvoort , Pim van der Hoorn

Graph processes exhibit a temporal structure determined by the sequence index and and a spatial structure determined by the graph support. To learn from graph processes, an information processing architecture must then be able to exploit…

Signal Processing · Electrical Eng. & Systems 2020-12-02 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

We present a general approach to study the flooding time (a measure of how fast information spreads) in dynamic graphs (graphs whose topology changes with time according to a random process). We consider arbitrary converging Markovian…

Discrete Mathematics · Computer Science 2015-03-19 Andrea Clementi , Riccardo Silvestri , Luca Trevisan

Let G be a vertex transitive graph. A study of the range of simple random walk on G and of its bridge is proposed. While it is expected that on a graph of polynomial growth the sizes of the range of the unrestricted random walk and of its…

Probability · Mathematics 2007-05-23 Itai Benjamini , Roey Izkovsky , Harry Kesten

Given a finite planar graph, a grove is a spanning forest in which every component tree contains one or more of a specified set of vertices (called nodes) on the outer face. For the uniform measure on groves, we compute the probabilities of…

Probability · Mathematics 2011-06-30 Richard W. Kenyon , David B. Wilson

We investigate the computational complexity of finding temporally disjoint paths or walks in temporal graphs. There, the edge set changes over discrete time steps and a temporal path (resp. walk) uses edges that appear at monotonically…

Data Structures and Algorithms · Computer Science 2021-05-25 Nina Klobas , George B. Mertzios , Hendrik Molter , Rolf Niedermeier , Philipp Zschoche

Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…

Data Structures and Algorithms · Computer Science 2025-10-06 Ethan Torres , Ramavarapu Sreenivas , Richard Sowers

A faithful description of the state of a complex dynamical network would require, in principle, the measurement of all its $d$ variables, an infeasible task for systems with practical limited access and composed of many nodes with high…

Chaotic Dynamics · Physics 2019-05-06 Christophe Letellier , Irene Sendiña-Nadal , Luis A. Aguirre

A tanglegram consists of two rooted binary trees and a perfect matching between their leaves, and a planar tanglegram is one that admits a layout with no crossings. We show that the problem of generating planar tanglegrams uniformly at…

Combinatorics · Mathematics 2023-04-13 Alexander E. Black , Kevin Liu , Alex Mcdonough , Garrett Nelson , Michael C. Wigal , Mei Yin , Youngho Yoo

We describe a new method for the random sampling of connected networks with a specified degree sequence. We consider both the case of simple graphs and that of loopless multigraphs. The constraints of fixed degrees and of connectedness are…

Physics and Society · Physics 2020-12-03 Szabolcs Horvát , Carl D. Modes

In this work we study the topological properties of temporal hypergraphs. Hypergraphs provide a higher dimensional generalization of a graph that is capable of capturing multi-way connections. As such, they have become an integral part of…

Computational Geometry · Computer Science 2023-02-07 Audun Myers , Cliff Joslyn , Bill Kay , Emilie Purvine , Gregory Roek , Madelyn Shapiro

In this work, we introduce a new algorithm for analyzing a diagram, which contains visual and textual information in an abstract and integrated way. Whereas diagrams contain richer information compared with individual image-based or…

Computer Vision and Pattern Recognition · Computer Science 2017-11-28 Daesik Kim , Youngjoon Yoo , Jeesoo Kim , Sangkuk Lee , Nojun Kwak

We study a class models of correlated random networks in which vertices are characterized by \textit{hidden variables} controlling the establishment of edges between pairs of vertices. We find analytical expressions for the main topological…

Disordered Systems and Neural Networks · Physics 2009-11-10 Marian Boguna , Romualdo Pastor-Satorras

Daily internet communication relies heavily on tree-structured graphs, embodied by popular data formats such as XML and JSON. However, many recent generative (probabilistic) models utilize neural networks to learn a probability distribution…

Machine Learning · Computer Science 2024-08-20 Milan Papež , Martin Rektoris , Tomáš Pevný , Václav Šmídl

The Glauber dynamics on the colourings of a graph is a random process which consists in recolouring at each step a random vertex of a graph with a new colour chosen uniformly at random among the colours not already present in its…

Combinatorics · Mathematics 2020-11-04 Marc Heinrich

Superbubbles are acyclic induced subgraphs of a digraph with single entrance and exit that naturally arise in the context of genome assembly and the analysis of genome alignments in computational biology. These structures can be computed in…

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