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Segregation of different cell types is a crucial process for the pattern formation in tissues, in particular during embryogenesis. Since the involved cell interactions are complex and difficult to measure individually in experiments,…

Cell Behavior · Quantitative Biology 2022-09-21 Florian Franke , Sebatian Aland , Hans-Joachim Böhme , Anja Voss-Böhme , Steffen Lange

Many social and biological networks consist of communities - groups of nodes within which connections are dense, but between which connections are sparser. Recently, there has been considerable interest in designing algorithms for detecting…

Physics and Society · Physics 2009-11-11 Chunguang Li , Philip K. Maini

The spatial structure of the cell is highly organized at all levels: from small complexes and assemblies, to local nano- and micro-clusters, to global, micrometer scales across and between cells. We suggest that this multiscale spatial cell…

Biomolecules · Quantitative Biology 2013-08-06 Ruth Nussinov

Various important and useful quantities or measures that characterize the topological network structure are usually investigated for a network, then they are averaged over the samples. In this paper, we propose an explicit representation by…

Physics and Society · Physics 2016-09-02 Yukio Hayashi

Traditional random graph models of networks generate networks that are locally tree-like, meaning that all local neighborhoods take the form of trees. In this respect such models are highly unrealistic, most real networks having strongly…

Statistical Mechanics · Physics 2011-03-02 Brian Karrer , M. E. J. Newman

In literature, a stochastic model for spreading nodes in a cellular cell is available. Despite its existence, the current method does not offer any versatility in dealing with sectored layers. Of course, this needed adaptability could be…

Information Theory · Computer Science 2013-06-04 Mouhamed Abdulla , Yousef R. Shayan , Junho Baek

During development, spatio-temporal patterns ranging from checkerboard to engulfing occur with precise proportions of the respective cell fates. Key developmental regulators are intracellular transcriptional interactions and intercellular…

Biological Physics · Physics 2022-11-15 Simon Schardt , Sabine C. Fischer

Owing to its unparalleled tractability, the Poisson point process (PPP) has emerged as a popular model for the analysis of cellular networks. Considering a stationary point process of users, which is independent of the base station (BS)…

Information Theory · Computer Science 2019-08-29 Praful D. Mankar , Priyabrata Parida , Harpreet S. Dhillon , Martin Haenggi

Cell complexes are topological spaces constructed from simple blocks called cells. They generalize graphs, simplicial complexes, and polyhedral complexes that form important domains for practical applications. They also provide a…

Machine Learning · Computer Science 2021-03-03 Mustafa Hajij , Kyle Istvan , Ghada Zamzmi

Three-dimensional random tessellations that are stable under iteration (STIT tessellations) are considered. They arise as a result of subsequent cell division, which implies that their cells are not face-to-face. The edges of the…

Probability · Mathematics 2012-09-26 Christoph Thaele , Viola Weiss , Werner Nagel

In this paper, we introduce an analytical framework to compute the average rate of downlink heterogeneous cellular networks. The framework leverages recent application of stochastic geometry to other-cell interference modeling and analysis.…

Information Theory · Computer Science 2016-11-18 Marco Di Renzo , Alessandro Guidotti , Giovanni E. Corazza

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

Many real life networks present an average path length logarithmic with the number of nodes and a degree distribution which follows a power law. Often these networks have also a modular and self-similar structure and, in some cases -…

Physics and Society · Physics 2010-02-17 Alicia Miralles , Francesc Comellas , Lichao Chen , Zhongzhi Zhang

It is becoming increasingly common to see large collections of network data objects -- that is, data sets in which a network is viewed as a fundamental unit of observation. As a result, there is a pressing need to develop network-based…

Statistics Theory · Mathematics 2019-02-08 Eric Kolaczyk , Lizhen Lin , Steven Rosenberg , Jie Xu , Jackson Walters

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

A random recursive cell splitting scheme of the $2$-dimensional unit sphere is considered, which is the spherical analogue of the STIT tessellation process from Euclidean stochastic geometry. First-order moments are computed for a large…

Probability · Mathematics 2017-11-06 Christian Deuß , Julia Hörrmann , Christoph Thaele

Spatially homogeneous random tessellations that are stable under iteration (nesting) in the 3-dimensional Euclidean space are considered, so-called STIT tessellations. They arise as outcome of a spatio-temporal process of subsequent cell…

Probability · Mathematics 2013-09-20 Christoph Thaele , Viola Weiss

Directed acyclic graphs are a fundamental class of networks that includes citation networks, food webs, and family trees, among others. Here we define a random graph model for directed acyclic graphs and give solutions for a number of the…

Physics and Society · Physics 2009-03-23 Brian Karrer , M. E. J. Newman

Analytical description of propagation phenomena on random networks has flourished in recent years, yet more complex systems have mainly been studied through numerical means. In this paper, a mean-field description is used to coherently…

Statistical Mechanics · Physics 2010-10-08 Laurent Hébert-Dufresne , Pierre-André Noël , Vincent Marceau , Antoine Allard , Louis J. Dubé

We study the urban-scale macroscopic traffic flow in city networks. Star graph is considered as traffic network. Star graphs with controlled traffic flow are transformed to various cell-transmission graphs by using the cell transmission…

Adaptation and Self-Organizing Systems · Physics 2019-12-10 Takashi Nagatani