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We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

Topological Data Analysis has grown in popularity in recent years as a way to apply tools from algebraic topology to large data sets. One of the main tools in topological data analysis is persistent homology. This paper uses undergraduate…

Algebraic Topology · Mathematics 2024-06-26 Cheyne Glass , Elizabeth Vidaurre

Graph theory provides fundamental concepts for many fields of science like statistical physics, network analysis and theoretical computer science. Here we give a pedagogical introduction to graph theory, divided into three sections. In the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Alexander K. Hartmann , Martin Weigt

Many decision-making algorithms draw inspiration from the inner workings of individual biological systems. However, it remains unclear whether collective behavior among biological species can also lead to solutions for computational tasks.…

Physics and Society · Physics 2024-09-04 Niek Mooij , Ivan Kryven

Communication networks form the backbone of our society. Topology control algorithms optimize the topology of such communication networks. Due to the importance of communication networks, a topology control algorithm should guarantee…

Software Engineering · Computer Science 2018-05-10 Roland Kluge , Michael Stein , Gergely Varró , Andy Schürr , Matthias Hollick , Max Mühlhäuser

Network-topology inference from (vertex) signal observations is a prominent problem across data-science and engineering disciplines. Most existing schemes assume that observations from all nodes are available, but in many practical…

Methodology · Statistics 2021-11-11 Andrei Buciulea , Samuel Rey , Antonio G. Marques

This work incorporates topological features via persistence diagrams to classify point cloud data arising from materials science. Persistence diagrams are multisets summarizing the connectedness and holes of given data. A new distance on…

Machine Learning · Statistics 2019-11-11 Vasileios Maroulas , Cassie Putman Micucci , Adam Spannaus

Introduced the quantitative measure of the structural complexity of the graph (complex network, etc.) based on a procedure similar to the renormalization process, considering the difference between actual and averaged graph structures on…

Physics and Society · Physics 2024-06-05 A. A. Snarskii

A dynamical network, a graph whose nodes are dynamical systems, is usually characterized by a large dimensional space which is not always accesible due to the impossibility of measuring all the variables spanning the state space. Therefore,…

Chaotic Dynamics · Physics 2019-07-25 Irene Sendiña-Nadal , Christophe Letellier

The community structure of complex networks reveals both their organization and hidden relationships among their constituents. Most community detection methods currently available are not deterministic, and their results typically depend on…

Physics and Society · Physics 2012-03-29 Andrea Lancichinetti , Santo Fortunato

We introduce the notion of doubling and r-tupling for simplicial complexes, a notion reminiscent to that of matching complexes in graph theory. We prove a connectivity result for such complexes and relate r-tupling to stabilizing r times…

Combinatorics · Mathematics 2025-06-13 Kathryn Lesh , Bridget Schreiner , Nathalie Wahl

Networks are a widely used and efficient paradigm to model real-world systems where basic units interact pairwise. Many body interactions are often at play, and cannot be modelled by resorting to binary exchanges. In this work, we consider…

Adaptation and Self-Organizing Systems · Physics 2020-06-03 Timoteo Carletti , Duccio Fanelli , Sara Nicoletti

The representation of complex systems as networks is inappropriate for the study of certain problems. We show several examples of social, biological, ecological and technological systems where the use of complex networks gives very limited…

Physics and Society · Physics 2013-04-02 Ernesto Estrada , Juan A. Rodriguez-Velazquez

Topological properties of networks are widely applied to study the link-prediction problem recently. Common Neighbors, for example, is a natural yet efficient framework. Many variants of Common Neighbors have been thus proposed to further…

Social and Information Networks · Computer Science 2014-09-18 Fei Tan , Yongxiang Xia , Boyao Zhu

Finding accurate reduced descriptions for large, complex, dynamically evolving networks is a crucial enabler to their simulation, analysis, and, ultimately, design. Here we propose and illustrate a systematic and powerful approach to…

Chaotic Dynamics · Physics 2017-05-02 Tom Bertalan , Yan Wu , Carlo Laing , C. William Gear , Ioannis G. Kevrekidis

In this paper, we study instances of complex neural networks, i.e. neural netwo rks with complex topologies. We use Self-Organizing Map neural networks whose n eighbourhood relationships are defined by a complex network, to classify handwr…

Neural and Evolutionary Computing · Computer Science 2007-10-02 Fei Jiang , Hugues Berry , Marc Schoenauer

Identifying critical nodes and links in graphs is a crucial task. These nodes/links typically represent critical elements/communication links that play a key role in a system's performance. However, a majority of the methods available in…

Social and Information Networks · Computer Science 2022-05-31 Sai Munikoti , Laya Das , Balasubramaniam Natarajan

In this paper we extend to a generic class of piecewise smooth dynamical systems a fundamental tool for the analysis of convergence of smooth dynamical systems: contraction theory. We focus on switched systems satisfying Caratheodory…

Optimization and Control · Mathematics 2011-10-06 Mario di Bernardo , Davide Liuzza , Giovanni Russo

This work proposes a novel distributed framework for verifying the incremental stability of large-scale systems with unknown dynamics and known interconnection structures using graph neural networks. Our proposed approach relies on the…

Systems and Control · Electrical Eng. & Systems 2025-12-09 Ahan Basu , Mahathi Anand , Pushpak Jagtap

We present a new, systematic approach for analyzing network topologies. We first introduce the dK-series of probability distributions specifying all degree correlations within d-sized subgraphs of a given graph G. Increasing values of d…

Networking and Internet Architecture · Computer Science 2008-04-16 Priya Mahadevan , Dmitri Krioukov , Kevin Fall , Amin Vahdat
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