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Markov networks and Bayesian networks are effective graphic representations of the dependencies embedded in probabilistic models. It is well known that independencies captured by Markov networks (called graph-isomorphs) have a finite…

Artificial Intelligence · Computer Science 2008-04-16 Sanjiang Li

Gaussian graphical models are a popular tool to learn the dependence structure in the form of a graph among variables of interest. Bayesian methods have gained in popularity in the last two decades due to their ability to simultaneously…

Statistics Theory · Mathematics 2019-04-02 Yabo Niu , Debdeep Pati , Bani Mallick

In the big data era, scalability has become a crucial requirement for any useful computational model. Probabilistic graphical models are very useful for mining and discovering data insights, but they are not scalable enough to be suitable…

Artificial Intelligence · Computer Science 2014-08-21 Khalifeh AlJadda , Mohammed Korayem , Camilo Ortiz , Trey Grainger , John A. Miller , William S. York

Directed acyclic graphical models, or DAG models, are widely used to represent complex causal systems. Since the basic task of learning such a model from data is NP-hard, a standard approach is greedy search over the space of directed…

Statistics Theory · Mathematics 2021-06-09 Liam Solus , Yuhao Wang , Caroline Uhler

In this paper, we develop a graphical modeling framework for the inference of networks across multiple sample groups and data types. In medical studies, this setting arises whenever a set of subjects, which may be heterogeneous due to…

In many domains, we are interested in analyzing the structure of the underlying distribution, e.g., whether one variable is a direct parent of the other. Bayesian model-selection attempts to find the MAP model and use its structure to…

Machine Learning · Computer Science 2013-01-18 Nir Friedman , Daphne Koller

Learning the causal structure that underlies data is a crucial step towards robust real-world decision making. The majority of existing work in causal inference focuses on determining a single directed acyclic graph (DAG) or a Markov…

Machine Learning · Computer Science 2021-06-15 Yashas Annadani , Jonas Rothfuss , Alexandre Lacoste , Nino Scherrer , Anirudh Goyal , Yoshua Bengio , Stefan Bauer

We develop a general methodological framework for probabilistic inference in discrete- and continuous-time stochastic processes evolving on directed acyclic graphs (DAGs). The process is observed only at the leaf nodes, and the challenge is…

Methodology · Statistics 2025-05-27 Frank van der Meulen , Moritz Schauer , Stefan Sommer

This paper considers a Bayesian view for estimating a sub-network in a Markov random field. The sub-network corresponds to the Markov blanket of a set of query variables, where the set of potential neighbours here is big. We factorize the…

Machine Learning · Statistics 2015-10-07 Dinu Kaufmann , Sonali Parbhoo , Aleksander Wieczorek , Sebastian Keller , David Adametz , Volker Roth

Directed acyclic graphs are widely used to describe the causal effects among random variables, and the inference of those causal effects has become an popular topic in statistics and machine learning, and has wide applications in…

Methodology · Statistics 2025-06-24 Chen Shuyan , Liu Xin , Wang Shaoli

Based on a recent development in the area of error control coding, we introduce the notion of convolutional factor graphs (CFGs) as a new class of probabilistic graphical models. In this context, the conventional factor graphs are referred…

Artificial Intelligence · Computer Science 2012-07-19 Yongyi Mao , Frank Kschischang , Brendan J. Frey

Equipping graph neural networks with a convolution operation defined in terms of a cellular sheaf offers advantages for learning expressive representations of heterophilic graph data. The most flexible approach to constructing the sheaf is…

Machine Learning · Computer Science 2025-09-15 Patrick Gillespie , Layal Bou Hamdan , Ioannis Schizas , David L. Boothe , Vasileios Maroulas

Randomising networks using a naive `accept-all' edge-swap algorithm is generally biased. Building on recent results for nondirected graphs, we construct an ergodic detailed balance Markov chain with non-trivial acceptance probabilities for…

Quantitative Methods · Quantitative Biology 2011-12-21 E. S. Roberts , A. C. C. Coolen

We present the algebraic representation and basic algorithms for MultiAspect Graphs (MAGs). A MAG is a structure capable of representing multilayer and time-varying networks, as well as higher-order networks, while also having the property…

Discrete Mathematics · Computer Science 2016-09-27 Klaus Wehmuth , Éric Fleury , Artur Ziviani

Most statistical models for networks focus on pairwise interactions between nodes. However, many real-world networks involve higher-order interactions among multiple nodes, such as co-authors collaborating on a paper. Hypergraphs provide a…

Methodology · Statistics 2025-09-16 Yichao Chen , Jingfei Zhang , Ji Zhu

We propose causal preference elicitation, a Bayesian framework for expert-in-the-loop causal discovery that actively queries local edge relations to concentrate a posterior over directed acyclic graphs (DAGs). From any black-box…

Machine Learning · Computer Science 2026-02-03 Edwin V. Bonilla , He Zhao , Daniel M. Steinberg

We introduce a new family of graphical models that consists of graphs with possibly directed, undirected and bidirected edges but without directed cycles. We show that these models are suitable for representing causal models with additive…

Machine Learning · Statistics 2017-05-30 Jose M. Peña , Marcus Bendtsen

Interactions and relations between objects may be pairwise or higher-order in nature, and so network-valued data are ubiquitous in the real world. The "space of networks", however, has a complex structure that cannot be adequately described…

Metric Geometry · Mathematics 2024-12-09 Stephen Y Zhang , Fangfei Lan , Youjia Zhou , Agnese Barbensi , Michael P H Stumpf , Bei Wang , Tom Needham

Attack graphs are a powerful tool for security risk assessment by analysing network vulnerabilities and the paths attackers can use to compromise network resources. The uncertainty about the attacker's behaviour makes Bayesian networks…

Cryptography and Security · Computer Science 2016-11-07 Luis Muñoz-González , Daniele Sgandurra , Martín Barrère , Emil Lupu

A directed multigraph is said vulnerable if it can generate Braess paradox in Traffic Networks. In this paper, we give a graph-theoretic characterisation of vulnerable directed multigraphs; analogous results appeared in the literature only…

Data Structures and Algorithms · Computer Science 2024-05-24 Pietro Cenciarelli , Daniele Gorla , Ivano Salvo