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Kingman's coalescent is a widely used process to model sample genealogies in population genetics. Recently there have been studies on the inference of quantities related to the genealogy of additional individuals given a known sample. This…

Probability · Mathematics 2024-02-29 Linglong Yuan

Consider the Markov process taking values in the partitions of N such that each pair of blocks merges at rate one, and each integer is eroded, i.e., becomes a singleton block, at rate d. This is a special case of exchangeable…

Probability · Mathematics 2019-07-15 Félix Foutel-Rodier , Amaury Lambert , Emmanuel Schertzer

Consider a random real tree whose leaf set, or boundary, is endowed with a finite mass measure. Each element of the tree is further given a type, or allele, inherited from the most recent atom of a random point measure…

Probability · Mathematics 2018-09-26 Jean-Jil Duchamps , Amaury Lambert

We study a model of a population with individuals sampled from different species. The Yule-$\Lambda$ nested coalescent describes the genealogy of the sample when each species merges with another randomly chosen species with a constant rate…

Probability · Mathematics 2024-01-05 Toni Gui

In a series of recent works it has been shown that a class of simple models of evolving populations under selection leads to genealogical trees whose statistics are given by the Bolthausen-Sznitman coalescent rather than by the well known…

Disordered Systems and Neural Networks · Physics 2015-05-28 Éric Brunet , Bernard Derrida

We consider the genealogy of a sample of individuals taken from a spatially structured population when the variance of the offspring distribution is relatively large. The space is structured into discrete sites of a graph G. If the…

Probability · Mathematics 2012-09-26 Benjamin Heuer , Anja Sturm

Consider an arbitrary large population at the present time, originated at an unspecified arbitrary large time in the past, where individuals in the same generation reproduce independently, forward in time, with the same offspring…

Probability · Mathematics 2024-06-05 Airam Blancas , Sandra Palau

We build and study an individual based model of the telomere length's evolution in a population across multiple generations. This model is a continuous time typed branching process, where the type of an individual includes its gamete mean…

Populations and Evolution · Quantitative Biology 2023-11-17 Athanasios Benetos , Olivier Coudray , Anne Gégout-Petit , Lionel Lenôtre , Simon Toupance , Denis Villemonais

The reproduction speed of a continuous-time branching random walk is proportional to a positive parameter $\lambda$. There is a threshold for $\lambda$, which is called $\lambda_w$, that separates almost sure global extinction from global…

Probability · Mathematics 2017-04-28 Daniela Bertacchi , Cristian F. Coletti , Fabio Zucca

Multiple studies of neural avalanches across different data modalities led to the prominent hypothesis that the brain operates near a critical point. The observed exponents often indicate the mean-field directed-percolation universality…

Neurons and Cognition · Quantitative Biology 2022-11-14 Roxana Zeraati , Victor Buendía , Tatiana A. Engel , Anna Levina

Population balance framework is a useful tool that can be used to describe size distribution of droplets in a liquid-liquid dispersion. Breakup and coalescence models provide closures for mathematical formulation of the population balance…

Fluid Dynamics · Physics 2015-11-25 Marcin Traczyk , Robert Sawko , Chris Thompson

For supercritical multitype branching processes in continuous time, we investigate the evolution of types along those lineages that survive up to some time t. We establish almost-sure convergence theorems for both time and population…

Probability · Mathematics 2007-05-23 Hans-Otto Georgii , Ellen Baake

Under mild non-degeneracy assumptions on branching rates in each generation, we provide a criterion for almost-sure extinction of a multi-type branching process with time-dependent branching rates. We also provide a criterion for the total…

Probability · Mathematics 2018-11-22 Dmitry Dolgopyat , Pratima Hebbar , Leonid Koralov , Mark Perlman

In this paper, we uncover new asymptotic isolation by distance patterns occurring under long-range dispersal of offspring. We extend a recent work of the first author, in which this information was obtained from forwards-in-time dynamics…

Probability · Mathematics 2025-04-10 Raphaël Forien , Bastian Wiederhold

We investigate the statistics of extremal path(s) (both the shortest and the longest) from the root to the bottom of a Cayley tree. The lengths of the edges are assumed to be independent identically distributed random variables drawn from a…

Statistical Mechanics · Physics 2009-10-31 Satya N. Majumdar , P. L. Krapivsky

When two (possibly different in distribution) continuous-state branching processes with immigration are present, we study the relative frequency of one of them when the total mass is forced to be constant at a dense set of times. This leads…

Probability · Mathematics 2023-03-14 María Emilia Caballero , Adrián González Casanova , José-Luis Pérez

We prove non-asymptotic stretched exponential tail bounds on the height of a randomly sampled node in a random combinatorial tree, which we use to prove bounds on the heights and widths of random trees from a variety of models. Our results…

Probability · Mathematics 2022-04-26 Louigi Addario-Berry , Anna Brandenberger , Jad Hamdan , Céline Kerriou

Variation in a sample of molecular sequence data informs about the past evolutionary history of the sample's population. Traditionally, Bayesian modeling coupled with the standard coalescent, is used to infer the sample's bifurcating…

Applications · Statistics 2024-10-22 Julie Zhang , Julia A. Palacios

Coalescent theory combined with statistical modeling allows us to estimate effective population size fluctuations from molecular sequences of individuals sampled from a population of interest. When sequences are sampled serially through…

Populations and Evolution · Quantitative Biology 2021-11-02 Michael D. Karcher , Marc A. Suchard , Gytis Dudas , Vladimir N. Minin

We consider a dynamic metapopulation involving one large population of size N surrounded by colonies of size \varepsilon_NN, usually called peripheral isolates in ecology, where N\to\infty and \varepsilon_N\to 0 in such a way that…

Probability · Mathematics 2013-03-15 Amaury Lambert , Chunhua Ma
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