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Combining tree decomposition and transfer matrix techniques provides a very general algorithm for computing exact partition functions of statistical models defined on arbitrary graphs. The algorithm is particularly efficient in the case of…

Mathematical Physics · Physics 2015-05-18 Andrea Bedini , Jesper Lykke Jacobsen

Adjoint algorithmic differentiation by operator and function overloading is based on the interpretation of directed acyclic graphs resulting from evaluations of numerical simulation programs. The size of the computer system memory required…

Mathematical Software · Computer Science 2022-07-15 Uwe Naumann

Compound graphs are networks in which vertices can be grouped into larger subsets, with these subsets capable of further grouping, resulting in a nesting that can be many levels deep. In several applications, including biological workflows,…

Human-Computer Interaction · Computer Science 2024-08-09 Chang Han , Justin Lieffers , Clayton Morrison , Katherine E. Isaacs

Emerging reconfigurable optical communication technologies allow to enhance datacenter topologies with demand-aware links optimized towards traffic patterns. This paper studies the algorithmic problem of jointly optimizing topology and…

Performance · Computer Science 2024-01-10 Wenkai Dai , Michael Dinitz , Klaus-Tycho Foerster , Long Luo , Stefan Schmid

Graphs are complex objects that do not lend themselves easily to typical learning tasks. Recently, a range of approaches based on graph kernels or graph neural networks have been developed for graph classification and for representation…

Machine Learning · Computer Science 2022-05-19 Chen Cai , Yusu Wang

In this paper we consider several problems concerning packet routing in distributed systems. Each problem is formulated using terms from Graph Theory and for each problem we present efficient, novel, algorithmic techniques for computing…

Data Structures and Algorithms · Computer Science 2009-06-19 Mugurel Ionut Andreica , Nicolae Tapus

We investigate the problem of sequentially predicting the binary labels on the nodes of an arbitrary weighted graph. We show that, under a suitable parametrization of the problem, the optimal number of prediction mistakes can be…

Machine Learning · Computer Science 2012-12-27 Nicolo' Cesa-Bianchi , Claudio Gentile , Fabio Vitale , Giovanni Zappella

Balanced partitioning is often a crucial first step in solving large-scale graph optimization problems, e.g., in some cases, a big graph can be chopped into pieces that fit on one machine to be processed independently before stitching the…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-10 Kevin Aydin , MohammadHossein Bateni , Vahab Mirrokni

We present a succinct data structure for permutation graphs, and their superclass of circular permutation graphs, i.e., data structures using optimal space up to lower order terms. Unlike concurrent work on circle graphs (Acan et al. 2022),…

Data Structures and Algorithms · Computer Science 2022-09-27 Konstantinos Tsakalidis , Sebastian Wild , Viktor Zamaraev

This paper presents the results of an experimental study of graph partitioning. We describe a new heuristic technique, path optimization, and its application to two variations of graph partitioning: the max_cut problem and the…

Combinatorics · Mathematics 2016-09-06 Jonathan Berry , Mark Goldberg

Given a $\{0,1\}$-matrix $M$, the graph realization problem for $M$ asks if there exists a spanning forest such that the columns of $M$ are incidence vectors of paths in the forest. The problem is closely related to the recognition of…

Discrete Mathematics · Computer Science 2025-06-27 Rolf van der Hulst , Matthias Walter

Partitioning a graph using graph separators, and particularly clique separators, are well-known techniques to decompose a graph into smaller units which can be treated independently. It was previously known that the treewidth was bounded…

Discrete Mathematics · Computer Science 2019-09-09 Boi Faltings , Martin Charles Golumbic

This paper gives a new algorithm for sampling tree-weighted partitions of a large class of planar graphs. Formally, the tree-weighted distribution on $k$-partitions of a graph weights $k$-partitions proportional to the product of the number…

Data Structures and Algorithms · Computer Science 2026-05-08 Sarah Cannon , Topher Pankow , Wesley Pegden , Jamie Tucker-Foltz

Minimal and efficient graph representations are key to store, communicate, and sample the search space of graphs and networks while meeting user-defined criteria. In this paper, we investigate the feasibility of gradient-free optimization…

Discrete Mathematics · Computer Science 2023-12-15 Victor Parque , Tomoyuki Miyashita

The independence number of a tree decomposition is the size of a largest independent set contained in a single bag. The tree-independence number of a graph $G$ is the minimum independence number of a tree decomposition of $G$. As shown…

Data Structures and Algorithms · Computer Science 2026-01-23 Daniel Lokshtanov , Michał Pilipczuk , Paweł Rzążewski

Learning-based planners leveraging Graph Neural Networks can learn search guidance applicable to large search spaces, yet their potential to address symmetries remains largely unexplored. In this paper, we introduce a graph representation…

Artificial Intelligence · Computer Science 2025-04-29 Yingbin Bai , Sylvie Thiebaux , Felipe Trevizan

In deep neural networks, better results can often be obtained by increasing the complexity of previously developed basic models. However, it is unclear whether there is a way to boost performance by decreasing the complexity of such models.…

Machine Learning · Computer Science 2021-09-07 Junran Wu , Jianhao Li , Yicheng Pan , Ke Xu

While graphs and abstract data structures can be large and complex, practical instances are often regular or highly structured. If the instance has sufficient structure, we might hope to compress the object into a more succinct…

Computational Complexity · Computer Science 2024-12-02 Shreya Gupta , Boyang Huang , Russell Impagliazzo , Stanley Woo , Christopher Ye

Graph partition is a key component to achieve workload balance and reduce job completion time in parallel graph processing systems. Among the various partition strategies, edge partition has demonstrated more promising performance in…

Data Structures and Algorithms · Computer Science 2020-12-18 Zhenyu Guo , Mingyu Xiao , Yi Zhou , Dongxiang Zhang , Kian-Lee Tan

We initiate the study of a fundamental combinatorial problem: Given a capacitated graph $G=(V,E)$, find a shortest walk ("route") from a source $s\in V$ to a destination $t\in V$ that includes all vertices specified by a set…

Data Structures and Algorithms · Computer Science 2018-05-01 Saeed Akhoondian Amiri , Klaus-Tycho Foerster , Stefan Schmid
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