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We study several enumeration problems connected to linear trees, a broad class which includes stars, paths, generalized stars, and caterpillars. We provide generating functions for counting the number of linear trees on $n$ vertices,…

Combinatorics · Mathematics 2020-03-23 Tanay Wakhare , Eric Wityk , Charles R. Johnson

We give a criterion when a planar tree-like curve, i.e. a generic immersed plane curve each double point of which cuts it into two disjoint parts, can be send by a diffeomorphism of the plane onto a curve with no inflection points. We also…

dg-ga · Mathematics 2008-02-03 Boris Shapiro

Null models of binary phylogenetic trees are useful for testing hypotheses on real world phylogenies. In this paper we consider phylogenies as binary trees without edge lengths together with a sampling measure and encode them as algebraic…

Probability · Mathematics 2020-06-17 Josué Nussbaumer , Anita Winter

There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…

Populations and Evolution · Quantitative Biology 2007-05-23 Frederick A. Matsen , Steven N. Evans

Given a simple graph $G$ with $n$ vertices and a natural number $i \leq n$, let $L_G(i)$ be the maximum number of leaves that can be realized by an induced subtree $T$ of $G$ with $i$ vertices. We introduce a problem that we call the…

A caterpillar tree is a connected, acyclic, graph in which all vertices are either a member of a central path, or joined to that central path by a single edge. In other words, caterpillar trees are the class of trees which become path…

Combinatorics · Mathematics 2018-10-30 Jacob Crabtree

Given an edge-weighted tree $T$ with $n$ leaves, sample the leaves uniformly at random without replacement and let $W_k$, $2 \le k \le n$, be the length of the subtree spanned by the first $k$ leaves. We consider the question, "Can $T$ be…

Combinatorics · Mathematics 2015-06-04 Steven N. Evans , Daniel Lanoue

Let $\mathcal{T}_n$ be the set of trees with $n$ vertices. Suppose that each tree in $\mathcal{T}_n$ is equally likely. We show that the number of different rooted trees of a tree equals $(\mu_r+o(1))n$ for almost every tree of…

Combinatorics · Mathematics 2013-05-21 Xueliang Li , Yiyang Li , Yongtang Shi

A linear forest is a collection of vertex-disjoint paths. The Linear Arboricity Conjecture states that every graph of maximum degree $\Delta$ can be decomposed into at most $\lceil(\Delta+1)/2\rceil$ linear forests. We prove that $\Delta/2…

Combinatorics · Mathematics 2025-07-29 Micha Christoph , Nemanja Draganić , António Girão , Eoin Hurley , Lukas Michel , Alp Müyesser

In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…

Data Structures and Algorithms · Computer Science 2016-04-12 Julien Baste , Christophe Paul , Ignasi Sau , Celine Scornavacca

Given two phylogenetic trees with the $\{1, \ldots, n\}$ leaf-set the maximum agreement subtree problem asks what is the maximum size of the subset $A \subseteq \{1, \ldots, n\}$ such that the two trees are equivalent when restricted to…

Combinatorics · Mathematics 2018-12-18 Alexey Markin

Phylogenetic networks are a generalization of phylogenetic trees that are used to represent non-tree-like evolutionary histories that arise in organisms such as plants and bacteria, or uncertainty in evolutionary histories. An…

Populations and Evolution · Quantitative Biology 2017-12-08 Andrew Francis , Katharina Huber , Vincent Moulton

Let $T$ be a random tree taken uniformly at random from the family of labelled trees on $n$ vertices. In this note, we provide bounds for $c(n)$, the number of sub-trees of $T$ that hold asymptotically almost surely. With computer support…

Combinatorics · Mathematics 2018-08-16 Bogumil Kaminski , Pawel Pralat

We investigate isometric embeddings of finite metric trees into $(\mathbb{R}^n,d_{1})$ and $( \mathbb{R}^n, d_{\infty})$. We prove that a finite metric tree can be isometrically embedded into $(\mathbb{R}^n,d_{1})$ if and only if the number…

Metric Geometry · Mathematics 2020-02-06 Asuman Güven Aksoy , Mehmet Kiliç , Sahin Koçak

The lattice dimension of a graph G is the minimal dimension of a cubic lattice in which G can be isometrically embedded. We prove that the lattice dimension of a tree with n leaves is $\lceil n/2 \rceil$.

Combinatorics · Mathematics 2007-05-23 Sergei Ovchinnikov

We prove asymptotic normality for the number of fringe subtrees isomorphic to any given tree in uniformly random trees with given vertex degrees. As applications, we also prove corresponding results for random labelled trees with given…

Probability · Mathematics 2023-12-08 Gabriel Berzunza Ojeda , Cecilia Holmgren , Svante Janson

In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…

Combinatorics · Mathematics 2018-01-19 Stefan Grünewald , Yangjing Long , Yaokun Wu

This article investigates combinatorial properties of non-ambiguous trees. These objects we define may be seen either as binary trees drawn on a grid with some constraints, or as a subset of the tree-like tableaux previously defined by…

Combinatorics · Mathematics 2013-05-17 Jean-Christophe Aval , Adrien Boussicault , Mathilde Bouvel , Matteo Silimbani

The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…

Probability · Mathematics 2009-01-07 Miklos Bona , Philippe Flajolet

Let v_1 and v_2 be two distinct vertices of a tree T_0. Let \phi_N^{(i)} (i=1,2) be the characteristic functions of the Sturm-Liouville problem on T_0 rooted at v_i with Neumann conditions at the root and let \phi_D^{(i)} (i=1,2) be the…

Mathematical Physics · Physics 2024-08-06 Mats-Erik Pistol , Vyacheslav Pivovarchik