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We propose a constructive approach to building temporal point processes that incorporate dependence on their history. The dependence is modeled through the conditional density of the duration, i.e., the interval between successive event…

Methodology · Statistics 2025-10-31 Xiaotian Zheng , Athanasios Kottas , Bruno Sansó

Collective behavior is commonly attributed to direct interactions among system components. Using a minimal stochastic model, we show that higher-order collective structure can instead emerge from shared stochastic environments, even in the…

The kinetics and thermodynamics of free living copolymerization are studied for processes with rates depending on k monomeric units of the macromolecular chain behind the unit that is attached or detached. In this case, the sequence of…

Chemical Physics · Physics 2018-01-04 Pierre Gaspard

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

The solution space of genome-scale models of cellular metabolism provides a map between physically viable flux configurations and cellular metabolic phenotypes described, at the most basic level, by the corresponding growth rates. By…

Molecular Networks · Quantitative Biology 2016-05-30 Daniele De Martino , Fabrizio Capuani , Andrea De Martino

We propose a model for describing the growth on an untreated tumor, which is characterized in a simple way by a minimal number of parameters with a well-defined physical interpretation. The model is motivated by invoking the Master Equation…

Populations and Evolution · Quantitative Biology 2007-05-23 José F. Nieves , Marcelo R. Ubriaco

Markets have internal dynamics leading to excess volatility and other phenomena that are difficult to explain using rational expectations models. This paper studies these using a nonequilibrium price formation rule, developed in the context…

adap-org · Physics 2015-06-30 J. Doyne Farmer

We give a comprehensive rate equation description for the irreversible growth of aggregates by migration from small to large aggregates. For a homogeneous rate K(i;j) at which monomers migrate from aggregates of size i to those of size j,…

Statistical Mechanics · Physics 2009-11-07 F. Leyvraz , S. Redner

We consider the long-run growth rate of the average value of a random multiplicative process $x_{i+1} = a_i x_i$ where the multipliers $a_i=1+\rho\exp(\sigma W_i - \frac12 \sigma^2 t_i)$ have Markovian dependence given by the exponential of…

Mathematical Physics · Physics 2020-12-08 Dan Pirjol

Let $(\{X_i(t)\}_{i\in \mathbb{Z}^d})_{t\geq 0}$ be the system of interacting diffusions on $[0,\infty)$ defined by the following collection of coupled stochastic differential equations: \begin{eqnarray}dX_i(t)=\sum\limits_{j\in…

Probability · Mathematics 2007-08-22 A. Greven , F. den Hollander

The symbiotic branching model in $\mathbb{R}$ describes the behavior of two branching populations migrating in space $\mathbb{R}$ in terms of a corresponding system of stochastic partial differential equations. The system is parametrized…

Probability · Mathematics 2025-04-08 Eran Avneri , Leonid Mytnik

The complexity of interactions between networks and territories has been widely acknowledged empirically, in particular through the existence of circular causal relations in their co-development, that can be understood as a co-evolution.…

Physics and Society · Physics 2018-09-06 Juste Raimbault

A new delay equation is introduced to describe the punctuated evolution of complex nonlinear systems. A detailed analytical and numerical investigation provides the classification of all possible types of solutions for the dynamics of a…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 V. I. Yukalov , E. P. Yukalova , D. Sornette

We revisit the modeling of the diauxic growth of a pure microorganism on two distinct sugars which was first described by Monod. Most available models are deterministic and make the assumption that all cells of the microbial ecosystem…

Populations and Evolution · Quantitative Biology 2020-05-19 Carl Graham , Jérôme Harmand , Sylvie Méléard , Josué Tchouanti

Interaction graphs, such as those recording emails between individuals or transactions between institutions, tend to be sparse yet structured, and often grow in an unbounded manner. Such behavior can be well-captured by structured,…

Machine Learning · Computer Science 2019-10-15 Elahe Ghalebi , Hamidreza Mahyar , Radu Grosu , Graham W. Taylor , Sinead A. Williamson

We report numerical investigations of a three-dimensional model of diffusive growth of fine particles, the internal structure of which corresponds to different crystal lattices. A growing cluster (particle) is immersed in, and exchanges…

Statistical Mechanics · Physics 2010-10-12 Vyacheslav Gorshkov , Alexandr Zavalov , Vladimir Privman

One aim of the equal load sharing fiber bundle model is to describe the critical behavior of failure events. One way of accomplishing this, is through a discrete recursive dynamics. We introduce a continuous mesoscopic equation catching the…

Statistical Mechanics · Physics 2018-09-19 Martin Hendrick , Srutarshi Pradhan , Alex Hansen

We analyze a reaction-diffusion system describing the growth of microbial species in a model of flocculation type that arises in biology. Existence of global classical positive solutions is proved under general growth assumptions, with…

Analysis of PDEs · Mathematics 2023-01-19 Jeffrey Morgan , Samia Zermani

A remarkable phenomenon in the time evolution of many networks such as cultural, political, national and economic systems, is the recurrent transition between the states of union and division of nodes. In this work, we propose a…

Physics and Society · Physics 2015-06-18 J. Jiang , R. Wang , M. Pezeril , Q. A. Wang

A classical problem describing the collective motion of cells, is the movement driven by consumption/depletion of a nutrient. Here we analyze one of the simplest such model written as a coupled Partial Differential Equation/Ordinary…

Analysis of PDEs · Mathematics 2022-09-02 Pierre-Emmanuel Jabin , Benoît Perthame
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