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This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

Flow networks are essential for both living organisms and enginneered systems. These networks often present complex dynamics controlled, at least in part, by their topology. Previous works have shown that topologically complex networks…

Soft Condensed Matter · Physics 2020-03-24 Miguel Ruiz-Garcia , Eleni Katifori

Key features of biological activity can often be captured by transitions between a finite number of semi-stable states that correspond to behaviors or decisions. We present here a broad class of dynamical systems that are ideal for modeling…

Dynamical Systems · Mathematics 2022-12-14 Megan Morrison , Lai-Sang Young

The stability of heteroclinic cycles may be obtained from the value of the local stability index along each connection of the cycle. We establish a way of calculating the local stability index for quasi-simple cycles: cycles whose…

Dynamical Systems · Mathematics 2018-02-15 Liliana Garrido-da-Silva , Sofia B. S. D. Castro

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

We address the level of complexity that can be observed in the dynamics near a robust heteroclinic network. We show that infinite switching, which is a path towards chaos, does not exist near a heteroclinic network such that the eigenvalues…

Dynamical Systems · Mathematics 2023-06-19 S. B. S. D. Castro , L. Garrido-da-Silva

This paper investigates the robustness of strong structural controllability for linear time-invariant and linear time-varying directed networks with respect to structural perturbations, including edge deletions and additions. In this…

Dynamical Systems · Mathematics 2020-05-26 Shima Sadat Mousavi , Mohammad Haeri , Mehran Mesbahi

In this short note we provide a proof of boundedness of solutions for a network system composed of heterogeneous nonlinear autonomous systems interconnected over a directed graph. The sole assumptions imposed are that the systems are…

Optimization and Control · Mathematics 2023-07-28 Anes Lazri , Elena Panteley , Antonio Loria

The behavior of complex systems is determined not only by the topological organization of their interconnections but also by the dynamical processes taking place among their constituents. A faithful modeling of the dynamics is essential…

Physics and Society · Physics 2015-05-20 R. Lambiotte , R. Sinatra , J. -C. Delvenne , T. S. Evans , M. Barahona , V. Latora

We present a dynamical system that naturally exhibits two unstable attractors that are completely enclosed by each others basin volume. This counter-intuitive phenomenon occurs in networks of pulse-coupled oscillators with delayed…

Chaotic Dynamics · Physics 2008-12-09 Christoph Kirst , Marc Timme

Robust heteroclinic cycles are known to change stability in resonance bifurcations, which occur when an algebraic condition on the eigenvalues of the system is satisfied and which typically result in the creation or destruction of a…

Chaotic Dynamics · Physics 2019-10-03 Vivien Kirk , Claire Postlethwaite , Alastair M. Rucklidge

We classify simple heteroclinic networks for a $\Gamma$-equivariant system in ${\mathbb R}^4$ with finite $\Gamma \subset {\rm O}(4)$, proceeding as follows: we define a graph associated with a given $\Gamma \subset {\rm O}(n)$ and identify…

Dynamical Systems · Mathematics 2019-09-04 Olga Podvigina , Alexander Lohse

In this article we give an in depth overview of the recent advances in the field of equilibrium networks. After outlining this topic, we provide a novel way of defining equilibrium graph (network) ensembles. We illustrate this concept on…

Statistical Mechanics · Physics 2007-05-23 I. Farkas , I. Derenyi , G. Palla , T. Vicsek

This paper analyses the stability of cycles within a heteroclinic network lying in a three-dimensional manifold formed by six cycles, for a one-parameter model developed in the context of game theory. We show the asymptotic stability of the…

Dynamical Systems · Mathematics 2022-04-05 Telmo Peixe , Alexandre A. Rodrigues

A digraph is connected-homogeneous if any isomorphism between finite connected induced subdigraphs extends to an automorphism of the digraph. We consider locally-finite connected-homogeneous digraphs with more than one end. In the case that…

Combinatorics · Mathematics 2010-11-30 Robert Gray , Rognvaldur G. Moller

Recent studies suggest that unstable recurrent solutions of the Navier-Stokes equation provide new insights into dynamics of turbulent flows. In this study, we compute an extensive network of dynamical connections between such solutions in…

Fluid Dynamics · Physics 2020-08-06 Balachandra Suri , Ravi Kumar Pallantla , Michael F. Schatz , Roman O. Grigoriev

Using a vector field in $\mathbb{R}^4$, we provide an example of a robust heteroclinic cycle between two equilibria that displays a mix of features exhibited by well-known types of low-dimensional heteroclinic structures, including simple,…

Dynamical Systems · Mathematics 2022-03-15 Sofia Castro , Alexander Lohse

We study expanding circle maps interacting in a heterogeneous random network. Heterogeneity means that some nodes in the network are massively connected, while the remaining nodes are only poorly connected. We provide a probabilistic…

Dynamical Systems · Mathematics 2013-08-27 Tiago Pereira , Sebastian van Strien , Jeroen S. W. Lamb

Many-body systems when continuous phase transition occurs are mainly built in the interrelationship between particles, implemented through many-body correlations. Some of them may exhibit so-called topological order hardly measured by…

Statistical Mechanics · Physics 2015-06-17 Chung-Pin Chou , Yi-Hua Wang , Ming-Chiang Chung

Phase transitions in equilibrium and nonequilibrium systems play a major role in the natural sciences. In dynamical networks, phase transitions organize qualitative changes in the collective behavior of coupled dynamical units. Adaptive…

Adaptation and Self-Organizing Systems · Physics 2023-02-22 Jan Fialkowski , Serhiy Yanchuk , Igor M. Sokolov , Eckehard Schöll , Georg A. Gottwald , Rico Berner