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The ability to extrapolate gene expression dynamics in living single cells requires robust cell segmentation, and one of the challenges is the amorphous or irregularly shaped cell boundaries. To address this issue, we modified the U-Net…

Quantitative Methods · Quantitative Biology 2020-01-17 Nanyan Zhu , Chen Liu , Zakary S. Singer , Tal Danino , Andrew F. Laine , Jia Guo

Recently, state-of-the-art results have been achieved in semantic segmentation using fully convolutional networks (FCNs). Most of these networks employ encoder-decoder style architecture similar to U-Net and are trained with images and the…

Computer Vision and Pattern Recognition · Computer Science 2019-01-28 Balamurali Murugesan , Kaushik Sarveswaran , Sharath M Shankaranarayana , Keerthi Ram , Mohanasankar Sivaprakasam

Medical image segmentation, the task of partitioning an image into meaningful parts, is an important step toward automating medical image analysis and is at the crux of a variety of medical imaging applications, such as computer aided…

Computer Vision and Pattern Recognition · Computer Science 2016-07-06 Masoud S. Nosrati , Ghassan Hamarneh

In this paper, we investigate the impact of segmentation algorithms as a preprocessing step for classification of remote sensing images in a deep learning framework. Especially, we address the issue of segmenting the image into regions to…

Computer Vision and Pattern Recognition · Computer Science 2016-09-23 Nicolas Audebert , Bertrand Le Saux , Sébastien Lefèvre

Semantic segmentation, which aims to acquire a detailed understanding of images, is an essential issue in computer vision. However, in practical scenarios, new categories that are different from the categories in training usually appear.…

Computer Vision and Pattern Recognition · Computer Science 2020-07-02 Haiyang Liu , Yichen Wang , Jiayi Zhao , Guowu Yang , Fengmao Lv

In this paper, we focus on three problems in deep learning based medical image segmentation. Firstly, U-net, as a popular model for medical image segmentation, is difficult to train when convolutional layers increase even though a deeper…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Wanli Chen , Yue Zhang , Junjun He , Yu Qiao , Yifan Chen , Hongjian Shi , Xiaoying Tang

Medical imaging refers to the technologies and methods utilized to view the human body and its inside, in order to diagnose, monitor, or even treat medical disorders. This paper aims to explore the application of deep learning techniques in…

Image and Video Processing · Electrical Eng. & Systems 2024-11-08 Ketan Suhaas Saichandran

Deep learning based image segmentation has achieved the state-of-the-art performance in many medical applications such as lesion quantification, organ detection, etc. However, most of the methods rely on supervised learning, which require a…

Computer Vision and Pattern Recognition · Computer Science 2020-04-20 Ruizhe Li , Dorothee Auer , Christian Wagner , Xin Chen

Deep learning has shown great promise in the ability to automatically annotate organs in magnetic resonance imaging (MRI) scans, for example, of the brain. However, despite advancements in the field, the ability to accurately segment…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Cosmin Ciausu , Deepa Krishnaswamy , Benjamin Billot , Steve Pieper , Ron Kikinis , Andrey Fedorov

Understanding the morphological structure of medical images and precisely segmenting the region of interest or abnormality is an important task that can assist in diagnosis. However, the unique properties of medical imaging make clear…

Computer Vision and Pattern Recognition · Computer Science 2024-09-04 Sungmin Kang , Jaeha Song , Jihie Kim

Medical image segmentation has made significant progress in recent years. Deep learning-based methods are recognized as data-hungry techniques, requiring large amounts of data with manual annotations. However, manual annotation is expensive…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Yi Lin , Yufan Chen , Kwang-Ting Cheng , Hao Chen

Incorporation of prior knowledge about organ shape and location is key to improve performance of image analysis approaches. In particular, priors can be useful in cases where images are corrupted and contain artefacts due to limitations in…

Visual localization techniques rely upon some underlying scene representation to localize against. These representations can be explicit such as 3D SFM map or implicit, such as a neural network that learns to encode the scene. The former…

Computer Vision and Pattern Recognition · Computer Science 2024-06-13 Maxime Pietrantoni , Gabriela Csurka , Martin Humenberger , Torsten Sattler

Accurate medical image segmentation is critical for disease quantification and treatment evaluation. While traditional Unet architectures and their transformer-integrated variants excel in automated segmentation tasks. However, they lack…

Image and Video Processing · Electrical Eng. & Systems 2025-06-09 Guanqun Sun , Yizhi Pan , Weikun Kong , Zichang Xu , Jianhua Ma , Teeradaj Racharak , Le-Minh Nguyen , Junyi Xin

This study addresses the essential task of medical image segmentation, which involves the automatic identification and delineation of anatomical structures and pathological regions in medical images. Accurate segmentation is crucial in…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Seyedeh Sahar Taheri Otaghsara , Reza Rahmanzadeh

Segmentation is a fundamental task in medical image analysis. However, most existing methods focus on primary region extraction and ignore edge information, which is useful for obtaining accurate segmentation. In this paper, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2019-07-26 Zhijie Zhang , Huazhu Fu , Hang Dai , Jianbing Shen , Yanwei Pang , Ling Shao

Current deep learning-based approaches for the segmentation of microscopy images heavily rely on large amount of training data with dense annotation, which is highly costly and laborious in practice. Compared to full annotation where the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-11 Shijie Li , Mengwei Ren , Thomas Ach , Guido Gerig

Semantic segmentation necessitates approaches that learn high-level characteristics while dealing with enormous amounts of data. Convolutional neural networks (CNNs) can learn unique and adaptive features to achieve this aim. However, due…

Computer Vision and Pattern Recognition · Computer Science 2023-07-19 Hasan AlMarzouqi , Lyes Saad Saoud

Deep learning has achieved remarkable success in medical image segmentation, often reaching expert-level accuracy in delineating tumors and tissues. However, most existing approaches remain task-specific, showing strong performance on…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Fares Bougourzi , Fadi Dornaika , Abdenour Hadid

Transfer learning is a machine learning technique that uses previously acquired knowledge from a source domain to enhance learning in a target domain by reusing learned weights. This technique is ubiquitous because of its great advantages…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Nermeen Abou Baker , Nico Zengeler , Uwe Handmann