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This paper presents a new regularization method to train a fully convolutional network for semantic tissue segmentation in histopathological images. This method relies on the benefit of unsupervised learning, in the form of image…

Computer Vision and Pattern Recognition · Computer Science 2020-11-26 C. T. Sari , C. Sokmensuer , C. Gunduz-Demir

Transfer learning is widely used for training machine learning models. Here, we study the role of transfer learning for training fully convolutional networks (FCNs) for medical image segmentation. Our experiments show that although transfer…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Davood Karimi , Simon K. Warfield , Ali Gholipour

Medical image segmentation is a relevant problem, with deep learning being an exponent. However, the necessity of a high volume of fully annotated images for training massive models can be a problem, especially for applications whose images…

Computer Vision and Pattern Recognition · Computer Science 2024-06-06 Matheus A. Cerqueira , Flávia Sprenger , Bernardo C. A. Teixeira , Alexandre X. Falcão

Development of deep learning systems for biomedical segmentation often requires access to expert-driven, manually annotated datasets. If more than a single expert is involved in the annotation of the same images, then the inter-expert…

Semantic image segmentation is the process of labeling each pixel of an image with its corresponding class. An encoder-decoder based approach, like U-Net and its variants, is a popular strategy for solving medical image segmentation tasks.…

Image and Video Processing · Electrical Eng. & Systems 2020-06-30 Debesh Jha , Michael A. Riegler , Dag Johansen , Pål Halvorsen , Håvard D. Johansen

Image segmentation is a fundamental task in image analysis and clinical practice. The current state-of-the-art techniques are based on U-shape type encoder-decoder networks with skip connections, called U-Net. Despite the powerful…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Chun-Wun Cheng , Christina Runkel , Lihao Liu , Raymond H Chan , Carola-Bibiane Schönlieb , Angelica I Aviles-Rivero

In this paper, we aim to improve the performance of semantic image segmentation in a semi-supervised setting in which training is effectuated with a reduced set of annotated images and additional non-annotated images. We present a method…

Computer Vision and Pattern Recognition · Computer Science 2019-10-31 Jizong Peng , Guillermo Estrada , Marco Pedersoli , Christian Desrosiers

Pixel-wise image segmentation is demanding task in computer vision. Classical U-Net architectures composed of encoders and decoders are very popular for segmentation of medical images, satellite images etc. Typically, neural network…

Computer Vision and Pattern Recognition · Computer Science 2018-01-18 Vladimir Iglovikov , Alexey Shvets

U-Net has been the go-to architecture for medical image segmentation tasks, however computational challenges arise when extending the U-Net architecture to 3D images. We propose the Implicit U-Net architecture that adapts the efficient…

Image and Video Processing · Electrical Eng. & Systems 2022-07-01 Sergio Naval Marimont , Giacomo Tarroni

This work explores a hybrid approach to segmentation as an alternative to a purely data-driven approach. We introduce an end-to-end U-Net based network called DU-Net, which uses additional frequency preserving features, namely the…

Image and Video Processing · Electrical Eng. & Systems 2020-04-16 Alakh Desai , Ruchi Chauhan , Jayanthi Sivaswamy

Image segmentation is a branch of computer vision that is widely used in real world applications including biomedical image processing. With recent advancement of deep learning, image segmentation has achieved at a very high level…

Image and Video Processing · Electrical Eng. & Systems 2023-05-25 Nima Hassanpour , Abouzar Ghavami

Semantic segmentation is a critical step in automated image interpretation and analysis where pixels are classified into one or more predefined semantically meaningful classes. Deep learning approaches for semantic segmentation rely on…

Computer Vision and Pattern Recognition · Computer Science 2023-07-10 Tushar Kataria , Beatrice Knudsen , Shireen Elhabian

Image segmentation and classification are the two main fundamental steps in pattern recognition. To perform medical image segmentation or classification with deep learning models, it requires training on large image dataset with annotation.…

Computer Vision and Pattern Recognition · Computer Science 2020-01-17 Anandhanarayanan Kamalakannan , Shiva Shankar Ganesan , Govindaraj Rajamanickam

Recent studies have demonstrated the superiority of deep learning in medical image analysis, especially in cell instance segmentation, a fundamental step for many biological studies. However, the excellent performance of the neural networks…

Image and Video Processing · Electrical Eng. & Systems 2022-10-25 Huaqian Wu , Nicolas Souedet , Caroline Jan , Cédric Clouchoux , Thierry Delzescaux

Segmentation of organs of interest in 3D medical images is necessary for accurate diagnosis and longitudinal studies. Though recent advances using deep learning have shown success for many segmentation tasks, large datasets are required for…

Computer Vision and Pattern Recognition · Computer Science 2020-11-20 Soopil Kim , Sion An , Philip Chikontwe , Sang Hyun Park

In clinical practice, regions of interest in medical imaging often need to be identified through a process of precise image segmentation. The quality of this image segmentation step critically affects the subsequent clinical assessment of…

Image and Video Processing · Electrical Eng. & Systems 2021-03-23 João B. S. Carvalho , João A. Santinha , Đorđe Miladinović , Joachim M. Buhmann

Automatic medical image segmentation, an essential component of medical image analysis, plays an importantrole in computer-aided diagnosis. For example, locating and segmenting the liver can be very helpful in livercancer diagnosis and…

Image and Video Processing · Electrical Eng. & Systems 2019-10-28 Xi Fang , Bo Du , Sheng Xu , Bradford J. Wood , Pingkun Yan

Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…

Computer Vision and Pattern Recognition · Computer Science 2019-01-24 Shan E Ahmed Raza , Linda Cheung , Muhammad Shaban , Simon Graham , David Epstein , Stella Pelengaris , Michael Khan , Nasir M. Rajpoot

Transfer learning improves the performance of deep learning models by initializing them with parameters pre-trained on larger datasets. Intuitively, transfer learning is more effective when pre-training is on the in-domain datasets. A…

Computer Vision and Pattern Recognition · Computer Science 2023-08-29 Khaled Alrfou , Tian Zhao , Amir Kordijazi

Models based on U-like structures have improved the performance of medical image segmentation. However, the single-layer decoder structure of U-Net is too "thin" to exploit enough information, resulting in large semantic differences between…

Image and Video Processing · Electrical Eng. & Systems 2023-09-08 Haoyuan Chen , Yufei Han , Pin Xu , Yanyi Li , Kuan Li , Jianping Yin