Related papers: Planting trees in graphs, and finding them back
In this paper we describe an algorithm that embeds a graph metric $(V,d_G)$ on an undirected weighted graph $G=(V,E)$ into a distribution of tree metrics $(T,D_T)$ such that for every pair $u,v\in V$, $d_G(u,v)\leq d_T(u,v)$ and…
We study the detection and the reconstruction of a large very dense subgraph in a social graph with $n$ nodes and $m$ edges given as a stream of edges, when the graph follows a power law degree distribution, in the regime when $m=O(n. \log…
We consider the problem of detecting a planted clique of size $k$ in a random graph on $n$ vertices. When the size of the clique exceeds $\Theta(\sqrt{n})$, polynomial-time algorithms for detection proliferate. We study faster -- namely,…
Treewidth is a graph parameter that plays a fundamental role in several structural and algorithmic results. We study the problem of decomposing a given graph $G$ into node-disjoint subgraphs, where each subgraph has sufficiently large…
Unrooted phylogenetic networks are graphs used to represent evolutionary relationships. Accurately reconstructing such networks is of great relevance for evolutionary biology. It has recently been conjectured that all phylogenetic networks…
The problem of computing the vertex expansion of a graph is an NP-hard problem. The current best worst-case approximation guarantees for computing the vertex expansion of a graph are a $O(\sqrt{\log n})$-approximation algorithm due to…
The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…
In this paper, we revisit the problem of sampling edges in an unknown graph $G = (V, E)$ from a distribution that is (pointwise) almost uniform over $E$. We consider the case where there is some a priori upper bound on the arboriciy of $G$.…
The reassembling of a simple connected graph G = (V,E) is an abstraction of a problem arising in earlier studies of network analysis. The reassembling process has a simple formulation (there are several equivalent formulations) relative to…
This article studies the problem of reconstructing the topology of a network of interacting agents via observations of the state-evolution of the agents. We focus on the large-scale network setting with the additional constraint of…
We investigate the degree distribution $P(k)$ and the clustering coefficient $C$ of the line graphs constructed on the Erd\"os-R\'enyi networks, the exponential and the scale-free growing networks. We show that the character of the degree…
Our input is a directed graph $G = (V,E)$ on $n$ vertices and $m$ edges with a designated root vertex $r$ and a function $cost: E \rightarrow \mathbb{R}_{\geq 0}$. The problem is to maintain a min-cost arborescence in $G$ in the presence of…
The graph reconstruction conjecture asserts that every finite simple graph on at least three vertices can be reconstructed up to isomorphism from its deck - the collection of its vertex-deleted subgraphs. Kocay's Lemma is an important tool…
A wide array of random graph models have been postulated to understand properties of observed networks. Typically these models have a parameter $t$ and a critical time $t_c$ when a giant component emerges. It is conjectured that for a large…
Embedding the vertices of arbitrary graphs into trees while minimizing some measure of overlap is an important problem with applications in computer science and physics. In this work, we consider the problem of bijectively embedding the…
In this article we study the treewidth of the \emph{display graph}, an auxiliary graph structure obtained from the fusion of phylogenetic (i.e., evolutionary) trees at their leaves. Earlier work has shown that the treewidth of the display…
We study the planted clique problem in which a clique of size k is planted in an Erd\H{o}s-R\'enyi graph G(n, 1/2), and one is interested in either detecting or recovering this planted clique. This problem is interesting because it is…
Given an undirected graph $G$, the Densest $k$-subgraph problem (DkS) asks to compute a set $S \subset V$ of cardinality $\left\lvert S\right\rvert \leq k$ such that the weight of edges inside $S$ is maximized. This is a fundamental NP-hard…
Phylogenetic networks provide a more general description of evolutionary relationships than rooted phylogenetic trees. One way to produce a phylogenetic network is to randomly place $k$ arcs between the edges of a rooted binary phylogenetic…
We study computational limitations in \emph{multi-plant} average-case inference problems, in which $t$ disjoint planted structures of size $k$ are embedded in a random background on $n$ elements. A natural parameter in this setting is the…