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The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Stress, edge crossings, and crossing angles play an important role in the quality and readability of graph drawings. Most standard graph drawing algorithms optimize one of these criteria which may lead to layouts that are deficient in other…

Computational Geometry · Computer Science 2019-08-26 Sabin Devkota , Reyan Ahmed , Felice De Luca , Katherine E. Isaacs , Stephen Kobourov

Graph Neural Networks (GNNs) have emerged as promising solutions for collaborative filtering (CF) through the modeling of user-item interaction graphs. The nucleus of existing GNN-based recommender systems involves recursive message passing…

Machine Learning · Computer Science 2024-05-21 Peiyan Zhang , Yuchen Yan , Xi Zhang , Chaozhuo Li , Senzhang Wang , Feiran Huang , Sunghun Kim

High parallel framework has been proved to be very suitable for graph processing. There are various work to optimize the implementation in FPGAs, a pipeline parallel device. The key to make use of the parallel performance of FPGAs is to…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-02 Chengbo Yang

There is a growing need for distributed graph processing systems that are capable of gracefully scaling to very large graph datasets. Unfortunately, this challenge has not been easily met due to the intense memory pressure imposed by…

Databases · Computer Science 2014-07-03 Yingyi Bu , Vinayak Borkar , Jianfeng Jia , Michael J. Carey , Tyson Condie

Federated graph learning is a widely recognized technique that promotes collaborative training of graph neural networks (GNNs) by multi-client graphs.However, existing approaches heavily rely on the communication of model parameters or…

Machine Learning · Computer Science 2025-05-06 Hao Zhang , Xunkai Li , Yinlin Zhu , Lianglin Hu

We propose a fine-grained hypergraph model for sparse matrix-matrix multiplication (SpGEMM), a key computational kernel in scientific computing and data analysis whose performance is often communication bound. This model correctly describes…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-18 Grey Ballard , Alex Druinsky , Nicholas Knight , Oded Schwartz

The increasing use of heterogeneous embedded systems with multi-core CPUs and Graphics Processing Units (GPUs) presents important challenges in effectively exploiting pipeline, task and data-level parallelism to meet throughput requirements…

Signal Processing · Electrical Eng. & Systems 2017-12-01 Shuoxin Lin , Jiahao Wu , Shuvra S. Bhattacharyya

The remarkable growth and significant success of machine learning have expanded its applications into programming languages and program analysis. However, a key challenge in adopting the latest machine learning methods is the representation…

Programming Languages · Computer Science 2023-12-01 Ali TehraniJamsaz , Quazi Ishtiaque Mahmud , Le Chen , Nesreen K. Ahmed , Ali Jannesari

This paper presents a family of algorithms for decentralized convex composite problems. We consider the setting of a network of agents that cooperatively minimize a global objective function composed of a sum of local functions plus a…

Optimization and Control · Mathematics 2023-02-14 Yichuan Li , Petros G. Voulgaris , Dusan M. Stipanovic , Nikolaos M. Freris

In a recent paper, Parikh and Boyd describe a method for solving a convex optimization problem, where each iteration involves evaluating a proximal operator and projection onto a subspace. In this paper we address the critical practical…

Optimization and Control · Mathematics 2015-03-31 Christopher Fougner , Stephen Boyd

In this paper, we use composite optimization algorithms to solve sigmoid networks. We equivalently transfer the sigmoid networks to a convex composite optimization and propose the composite optimization algorithms based on the linearized…

Optimization and Control · Mathematics 2023-07-10 Huixiong Chen , Qi Ye

Many disciplines of science and engineering deal with problems related to compositions, ranging from chemical compositions in materials science to portfolio compositions in economics. They exist in non-Euclidean simplex spaces, causing many…

Materials Science · Physics 2024-11-06 Adam M. Krajewski , Allison M. Beese , Wesley F. Reinhart , Zi-Kui Liu

Distributed graph platforms like Pregel have used vertex- centric programming models to process the growing corpus of graph datasets using commodity clusters. The irregular structure of graphs cause load imbalances across machines operating…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-13 Ravikant Dindokar , Yogesh Simmhan

Decentralized Federated Graph Learning (DFGL) overcomes potential bottlenecks of the parameter server in FGL by establishing a peer-to-peer (P2P) communication network among workers. However, while extensive cross-worker communication of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-11 Shilong Wang , Jianchun Liu , Hongli Xu , Chenxia Tang , Qianpiao Ma , Liusheng Huang

Graph-based methods are known to be successful in many machine learning and pattern classification tasks. These methods consider semi-structured data as graphs where nodes correspond to primitives (parts, interest points, segments, etc.)…

Computer Vision and Pattern Recognition · Computer Science 2018-03-02 Anjan Dutta , Hichem Sahbi

Graph learning models have been widely deployed in collaborative filtering (CF) based recommendation systems. Due to the issue of data sparsity, the graph structure of the original input lacks potential positive preference edges, which…

Information Retrieval · Computer Science 2024-07-02 Peng Yuan , Haojie Li , Minying Fang , Xu Yu , Yongjing Hao , Junwei Du

The rapid growth of deep learning models has increased the demand for efficient distributed training strategies. Fully sharded approaches like ZeRO-3 and FSDP partition model parameters across GPUs and apply optimizations such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-20 Masahiro Tanaka , Du Li , Umesh Chand , Ali Zafar , Haiying Shen , Olatunji Ruwase

We consider the problem of decentralized composite optimization over a symmetric connected graph, in which each node holds its own agent-specific private convex functions, and communications are only allowed between nodes with direct links.…

Optimization and Control · Mathematics 2018-09-06 Bin Wang , Jun Fang , Huiping Duan , Hongbin Li

Federated graph learning (FGL) has gained significant attention for enabling heterogeneous clients to process their private graph data locally while interacting with a centralized server, thus maintaining privacy. However, graph data on…

Machine Learning · Computer Science 2024-12-19 Ruyue Liu , Rong Yin , Xiangzhen Bo , Xiaoshuai Hao , Xingrui Zhou , Yong Liu , Can Ma , Weiping Wang