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The discovery of genomic polymorphisms influencing gene expression (also known as expression quantitative trait loci or eQTLs) can be formulated as a sparse Bayesian multivariate/multiple regression problem. An important aspect in the…

Genomics · Quantitative Biology 2019-06-13 Dimitrios V Vavoulis

In this paper, a possibilistic disjunctive logic programming approach for modeling uncertain, incomplete and inconsistent information is defined. This approach introduces the use of possibilistic disjunctive clauses which are able to…

Artificial Intelligence · Computer Science 2015-03-19 Juan Carlos Nieves , Mauricio Osorio , Ulises Cortés

We propose a new probabilistic programming language for the design and analysis of perception systems, especially those based on machine learning. Specifically, we consider the problems of training a perception system to handle rare events,…

As computational challenges in optimization and statistical inference grow ever harder, algorithms that utilize derivatives are becoming increasingly more important. The implementation of the derivatives that make these algorithms so…

Mathematical Software · Computer Science 2015-09-25 Bob Carpenter , Matthew D. Hoffman , Marcus Brubaker , Daniel Lee , Peter Li , Michael Betancourt

We present sparse topical coding (STC), a non-probabilistic formulation of topic models for discovering latent representations of large collections of data. Unlike probabilistic topic models, STC relaxes the normalization constraint of…

Machine Learning · Computer Science 2012-02-20 Jun Zhu , Eric P. Xing

Probabilistic programming languages represent complex data with intermingled models in a few lines of code. Efficient inference algorithms in probabilistic programming languages make possible to build unified frameworks to compute…

Machine Learning · Statistics 2016-07-15 Anh Tong , Jaesik Choi

Probabilistic Answer Set Programming under the credal semantics (PASP) extends Answer Set Programming with probabilistic facts that represent uncertain information. The probabilistic facts are discrete with Bernoulli distributions. However,…

Artificial Intelligence · Computer Science 2025-02-19 Damiano Azzolini , Fabrizio Riguzzi

Modern language models define distributions over strings, but downstream tasks often require different output formats. For instance, a model that generates byte-pair strings does not directly produce word-level predictions, and a DNA model…

Computation and Language · Computer Science 2026-03-09 Vésteinn Snæbjarnarson , Samuel Kiegeland , Tianyu Liu , Reda Boumasmoud , Ryan Cotterell , Tim Vieira

We study the problem of recognizing regular languages in a variant of the streaming model of computation, called the sliding window model. In this model, we are given a size of the sliding window $n$ and a stream of symbols. At each time…

Data Structures and Algorithms · Computer Science 2019-09-25 Moses Ganardi , Danny Hucke , Markus Lohrey , Tatiana Starikovskaya

The thesis presents an attempt at using the syntactic structure in natural language for improved language models for speech recognition. The structured language model merges techniques in automatic parsing and language modeling using an…

Computation and Language · Computer Science 2007-05-23 Ciprian Chelba

Human language is full of compositional syntactic structures, and although neural networks have contributed to groundbreaking improvements in computer systems that process language, widely-used neural network architectures still exhibit…

Computation and Language · Computer Science 2023-05-19 Brian DuSell

In this paper we introduce RankPL, a modeling language that can be thought of as a qualitative variant of a probabilistic programming language with a semantics based on Spohn's ranking theory. Broadly speaking, RankPL can be used to…

Artificial Intelligence · Computer Science 2017-05-23 Tjitze Rienstra

This thesis presents a broad-coverage probabilistic top-down parser, and its application to the problem of language modeling for speech recognition. The parser builds fully connected derivations incrementally, in a single pass from…

Computation and Language · Computer Science 2007-05-23 Brian Roark

Large language models (LLMs) are increasingly used for complex tasks that require multiple generation calls, advanced prompting techniques, control flow, and structured inputs/outputs. However, efficient systems are lacking for programming…

Signal Temporal Logic (STL) is an expressive formal language for specifying spatio-temporal requirements over real-valued, real-time signals. It has been widely used for the verification and synthesis of autonomous systems and…

Artificial Intelligence · Computer Science 2026-05-12 Bowen Ye , Zhijian Li , Junyue Huang , Junkai Ma , Xiang Yin

LLMs are widely used for code generation and mathematical reasoning tasks where they are required to generate structured output. They either need to reason about code, generate code for a given specification, or reason using programs of…

Computation and Language · Computer Science 2026-04-21 Poorva Garg , Renato Lui Geh , Daniel Israel , Todd Millstein , Kyle Richardson , Guy Van den Broeck

Semantic Textual Similarity (STS) is a crucial component of many Natural Language Processing (NLP) applications. However, existing approaches typically reduce semantic nuances to a single score, limiting interpretability. To address this,…

Computation and Language · Computer Science 2026-05-15 Diego Miguel Lozano , Daryna Dementieva , Alexander Fraser

While program comprehension tools often use static program analysis techniques to obtain useful information, they usually work only with sufficiently scalable techniques with limited precision. A possible improvement of this approach is to…

Software Engineering · Computer Science 2025-03-21 Robert Husák , Jan Kofroň , Filip Zavoral

We introduce Retrieval-Based Speculative Decoding (REST), a novel algorithm designed to speed up language model generation. The key insight driving the development of REST is the observation that the process of text generation often…

Computation and Language · Computer Science 2024-04-05 Zhenyu He , Zexuan Zhong , Tianle Cai , Jason D. Lee , Di He

This paper presents the first slicing approach for probabilistic programs based on specifications. We show that when probabilistic programs are accompanied by their specifications in the form of pre- and post-condition, we can exploit this…

Programming Languages · Computer Science 2022-05-10 Marcelo Navarro , Federico Olmedo