Related papers: On chordal phylogeny graphs

We study "positive" graphs that have a nonnegative homomorphism number into every edge-weighted graph (where the edgeweights may be negative). We conjecture that all positive graphs can be obtained by taking two copies of an arbitrary…

A graph is locally chordal if each of its small-radius balls is chordal. In an earlier work [AKK25], the authors and Kobler proved that locally chordal graphs can be characterized by having chordal local covers, by forbidding short cycles…

Let $\core G$ and $\corona G$ denote the intersection and the union, respectively, of all maximum independent sets of a graph $G$. A graph is called \emph{$2$-bicritical} if $\a{N(S)}>\a S$ for every nonempty independent set $S$.…

A graph is circle if its vertices are in correspondence with a family of chords in a circle in such a way that every two distinct vertices are adjacent if and only if the corresponding chords have nonempty intersection. Even though there…

We prove that the class of chordal graphs is easily testable in the following sense. There exists a constant $c>0$ such that, if adding/removing at most $\epsilon n^2$ edges to a graph $G$ with $n$ vertices does not make it chordal, then a…

We suggest two related conjectures dealing with the existence of spanning irregular subgraphs of graphs. The first asserts that any $d$-regular graph on $n$ vertices contains a spanning subgraph in which the number of vertices of each…

The family $D(k,m)$ of graphs having an orientation such that for every vertex $v \in V(G)$ either (outdegree) $\deg^+(v) \le k$ or (indegree) $\deg^-(v) \le m$ have been investigated recently in several papers because of the role $D(k,m)$…

Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

We introduce a class of chordal graphs called ($d_1$,$d_2$,$\dots$,$d_q$)-trees. A graph belongs to this class if and only if its clique complex is sequentially Cohen-Macaulay, providing a complete classification of all sequentially…

For finite q, we classify the countable, descendant-homogeneous digraphs in which the descendant set of any vertex is a q-valent tree. We also give conditions on a rooted digraph G which allow us to construct a countable…

A strong edge-coloring of a graph $G$ is an edge-coloring in which every color class is an induced matching, and the strong chromatic index $\chi_s'(G)$ is the minimum number of colors needed in strong edge-colorings of $G$. A graph is…

An acyclic edge coloring of a graph is a proper edge coloring without any bichromatic cycles. The acyclic chromatic index of a graph $G$ denoted by $a'(G)$, is the minimum $k$ such that $G$ has an acyclic edge coloring with $k$ colors.…

We consider a family of toroidal graphs, denoted by $\mathcal{T}_{i, j}$, which contain neither $i$-cycles nor $j$-cycles. A graph $G$ is $(d, h)$-decomposable if it contains a subgraph $H$ with $\Delta(H) \leq h$ such that $G - E(H)$ is a…

Many standard graph classes are known to be characterized by means of layouts (a permutation of its vertices) excluding some patterns. Important such graph classes are among others: proper interval graphs, interval graphs, chordal graphs,…

For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…

A geometric graph is a graph drawn in the plane with vertices represented by points and edges as straight-line segments. A geometric graph contains a (k,l)-crossing family if there is a pair of edge subsets E_1,E_2 such that |E_1| = k and…

A bridgeless cubic graph $G$ is said to have a 2-bisection if there exists a 2-vertex-colouring of $G$ (not necessarily proper) such that: (i) the colour classes have the same cardinality, and (ii) the monochromatic components are either an…

For nonnegative integers $k$ and $l$, let $\mathscr{D}(k,l)$ denote the family of digraphs in which every vertex has either indegree at most $k$ or outdegree at most $l$. In this paper we prove that the edges of every digraph in…

Two genes are xenologs in the sense of Fitch if they are separated by at least one horizontal gene transfer event. Horizonal gene transfer is asymmetric in the sense that the transferred copy is distinguished from the one that remains…

\qquad A \emph{coloring} of a digraph $D=(V,E)$ is a coloring of its vertices following the rule: Let $uv$ be an arc in $D$. If the tail $u$ is colored first, then the head $v$ should receive a color different from that of $u$. The…