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We introduce Dimple, a fully open-source API for probabilistic modeling. Dimple allows the user to specify probabilistic models in the form of graphical models, Bayesian networks, or factor graphs, and performs inference (by automatically…

Software Engineering · Computer Science 2012-12-14 Shawn Hershey , Jeff Bernstein , Bill Bradley , Andrew Schweitzer , Noah Stein , Theo Weber , Ben Vigoda

Ordinary Differential Equations (ODE) are used throughout science where the capture of rates of change in states is sought. While both pieces of commercial and open software exist to study such systems, their efficient and accurate usage…

Mathematical Software · Computer Science 2018-03-20 Edwin Tye , Tom Finnie , Ian Hall , Steve Leach

Array programming provides a powerful, compact, expressive syntax for accessing, manipulating, and operating on data in vectors, matrices, and higher-dimensional arrays. NumPy is the primary array programming library for the Python…

Automated unit test generation is a well-known methodology aiming to reduce the developers' effort of writing tests manually. Prior research focused mainly on statically typed programming languages like Java. In practice, however,…

Software Engineering · Computer Science 2022-02-11 Stephan Lukasczyk , Gordon Fraser

Tensors are higher-order extensions of matrices. While matrix methods form the cornerstone of machine learning and data analysis, tensor methods have been gaining increasing traction. However, software support for tensor operations is not…

Machine Learning · Computer Science 2018-05-10 Jean Kossaifi , Yannis Panagakis , Anima Anandkumar , Maja Pantic

Probabilistic programming has become a standard practice to model stochastic events and learn about the behavior of nature in different scientific contexts, ranging from Genetics and Ecology to Linguistics and Psychology. However, domain…

Programming Languages · Computer Science 2025-07-10 Guilherme Espada , Alcides Fonseca

We introduce a library called Push that takes a probabilistic programming approach to Bayesian deep learning (BDL). This library enables concurrent execution of BDL inference algorithms on multi-GPU hardware for neural network (NN) models.…

Machine Learning · Computer Science 2023-10-03 Daniel Huang , Chris Camaño , Jonathan Tsegaye , Jonathan Austin Gale

PoPPy is a Point Process toolbox based on PyTorch, which achieves flexible designing and efficient learning of point process models. It can be used for interpretable sequential data modeling and analysis, e.g., Granger causality analysis of…

Machine Learning · Computer Science 2019-10-14 Hongteng Xu

In this paper we introduce ZhuSuan, a python probabilistic programming library for Bayesian deep learning, which conjoins the complimentary advantages of Bayesian methods and deep learning. ZhuSuan is built upon Tensorflow. Unlike existing…

Machine Learning · Statistics 2017-09-19 Jiaxin Shi , Jianfei Chen , Jun Zhu , Shengyang Sun , Yucen Luo , Yihong Gu , Yuhao Zhou

We develop a technique for generalising from data in which models are samplers represented as program text. We establish encouraging empirical results that suggest that Markov chain Monte Carlo probabilistic programming inference techniques…

Artificial Intelligence · Computer Science 2014-07-11 Yura N. Perov , Frank D. Wood

DeepInverse is an open-source PyTorch-based library for solving imaging inverse problems. The library covers all crucial steps in image reconstruction from the efficient implementation of forward operators (e.g., optics, MRI, tomography),…

We introduce TurboGP, a Genetic Programming (GP) library fully written in Python and specifically designed for machine learning tasks. TurboGP implements modern features not available in other GP implementations, such as island and cellular…

Neural and Evolutionary Computing · Computer Science 2023-09-04 Lino Rodriguez-Coayahuitl , Alicia Morales-Reyes , Hugo Jair Escalante

We introduce MRpro, an open-source image reconstruction package built upon PyTorch and open data formats. The framework comprises three main areas. First, it provides unified data structures for the consistent manipulation of MR datasets…

Our predictions for particle physics processes are realized in a chain of complex simulators. They allow us to generate high-fidelity simulated data, but they are not well-suited for inference on the theory parameters with observed data. We…

High Energy Physics - Phenomenology · Physics 2020-11-03 Johann Brehmer , Kyle Cranmer

This paper considers the problem of forecasting mortality rates. A large number of models have already been proposed for this task, but they generally have the disadvantage of either estimating the model in a two-step process, possibly…

Applications · Statistics 2023-05-26 Patrik Andersson , Mathias Lindholm

As the field of Spoken Dialogue Systems and Conversational AI grows, so does the need for tools and environments that abstract away implementation details in order to expedite the development process, lower the barrier of entry to the…

Human-Computer Interaction · Computer Science 2020-01-20 Alexandros Papangelis , Mahdi Namazifar , Chandra Khatri , Yi-Chia Wang , Piero Molino , Gokhan Tur

Probabilistic time series forecasting involves estimating the distribution of future based on its history, which is essential for risk management in downstream decision-making. We propose a deep state space model for probabilistic time…

Machine Learning · Computer Science 2021-02-02 Longyuan Li , Junchi Yan , Xiaokang Yang , Yaohui Jin

This contribution is concerned with the following issue: can pretrained large language models (LLMs) be refined and customized to the point where they become virtual assistants helping experts with the effective use of a simulation tool? In…

Artificial Intelligence · Computer Science 2025-08-20 Jingquan Wang , Andrew Negrut , Harry Zhang , Khailanii Slaton , Shu Wang , Radu Serban , Jinlong Wu , Dan Negrut

This document serves to complement our website which was developed with the aim of exposing the students to Gaussian Processes (GPs). GPs are non-parametric Bayesian regression models that are largely used by statisticians and geospatial…

Machine Learning · Computer Science 2018-09-07 Kshitij Tiwari

Probabilistic programming makes it easy to represent a probabilistic model as a program. Building an individual model, however, is only one step of probabilistic modeling. The broader challenge of probabilistic modeling is in understanding…

Programming Languages · Computer Science 2022-08-15 Ryan Bernstein