Related papers: Squared distance matrix of a weighted tree
Tree-level scattering amplitudes for a scalar particle coupled to an arbitrary number N of photons and a single graviton are computed. We employ the worldline formalism as the main tool to compute the irreducible part of the amplitude,…
An elliptic random matrix $X$ is a square matrix whose $(i,j)$-entry $X_{ij}$ is independent of the rest of the entries except possibly $X_{ji}$. Elliptic random matrices generalize Wigner matrices and non-Hermitian random matrices with…
In this article, we propose tree edit distance with variables, which is an extension of the tree edit distance to handle trees with variables and has a potential application to measuring the similarity between mathematical formulas,…
Uniform spanning trees are a statistical model obtained by taking the set of all spanning trees on a given graph (such as a portion of a cubic lattice in d dimensions), with equal probability for each distinct tree. Some properties of such…
We develop a general framework for reasoning about distances between transition systems with quantitative information. Taking as starting point an arbitrary distance on system traces, we show how this leads to natural definitions of a…
We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…
Square matrices of the form $\widetilde{\mathbf{A}} =\mathbf{A} + \mathbf{e}D \mathbf{f}^*$ are considered. An explicit expression for the inverse is given, provided $\widetilde{\mathbf{A}}$ and $D$ are invertible with…
We define a multi-scale metric $d_\rho$ on strings by aggregating angle distances between all $n$-gram count vectors with exponential weights $\rho^n$. We benchmark $d_\rho$ in DBSCAN clustering against edit and $n$-gram baselines, give a…
It is known that every complex square matrix with nonnegative determinant is the product of positive semi-definite matrices. There are characterizations of matrices that require two or five positive semi-definite matrices in the product.…
Let $G_n$ be a random geometric graph with vertex set $[n]$ based on $n$ i.i.d.\ random vectors $X_1,\ldots,X_n$ drawn from an unknown density $f$ on $\R^d$. An edge $(i,j)$ is present when $\|X_i -X_j\| \le r_n$, for a given threshold…
Graham-Pollak showed that for $D = D_T$ the distance matrix of a tree $T$, det$(D)$ depends only on its number of edges. Several other variants of $D$, including directed/multiplicative/$q$- versions were studied, and always, det$(D)$…
The Edge Multicut problem is a classical cut problem where given an undirected graph $G$, a set of pairs of vertices $\mathcal{P}$, and a budget $k$, the goal is to determine if there is a set $S$ of at most $k$ edges such that for each…
In distributed optimization or Nash-equilibrium seeking over directed graphs, it is crucial to find a matrix norm under which the disagreement of individual agents' states contracts. In existing results, the matrix norm is usually defined…
Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…
The Steiner distance of a set of vertices in a graph is the fewest number of edges in any connected subgraph containing those vertices. The order-$k$ Steiner distance hypermatrix of an $n$-vertex graph is the $n \times \cdots \times n$ ($k$…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
We study the structured distance to singularity for a given regular matrix pencil $A+sE$, where $(A,E)\in \mathbb S \subseteq (\mathbb C^{n,n})^2$. This includes Hermitian, skew-Hermitian, $*$-even, $*$-odd, $*$-palindromic, T-palindromic,…
Dissimilarity measures for (possibly weighted) phylogenetic trees based on the comparison of their vectors of path lengths between pairs of taxa, have been present in the systematics literature since the early seventies. But, as far as…
Let $T(n)$ denote the maximum number of unit distances that a set of $n$ points in the Euclidean plane $\mathbb{R}^2$ can determine with the additional condition that the distinct unit length directions determined by the configuration must…
We give algorithms to compute the Fr\'echet distance of trees and graphs with bounded tree width. Our algorithms run in $O(n^2)$ time for trees of bounded degree, and $O(n^2\sqrt{n \log n})$ time for trees of arbitrary degree. For graphs of…