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Cellular composition prediction, i.e., predicting the presence and counts of different types of cells in the tumor microenvironment from a digitized image of a Hematoxylin and Eosin (H&E) stained tissue section can be used for various tasks…

Quantitative Methods · Quantitative Biology 2021-08-27 Muhammad Dawood , Kim Branson , Nasir M. Rajpoot , Fayyaz ul Amir Afsar Minhas

Retinal vessel segmentation is of great interest for diagnosis of retinal vascular diseases. To further improve the performance of vessel segmentation, we propose IterNet, a new model based on UNet, with the ability to find obscured details…

Image and Video Processing · Electrical Eng. & Systems 2019-12-13 Liangzhi Li , Manisha Verma , Yuta Nakashima , Hajime Nagahara , Ryo Kawasaki

Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Haoyi Liang , Aijaz Naik , Cedric L. Williams , Jaideep Kapur , Daniel S. Weller

In this paper, we propose a compact network called CUNet (compact unsupervised network) to counter the image classification challenge. Different from the traditional convolutional neural networks learning filters by the time-consuming…

Computer Vision and Pattern Recognition · Computer Science 2016-07-07 Le Dong , Ling He , Gaipeng Kong , Qianni Zhang , Xiaochun Cao , Ebroul Izquierdo

Reliable analysis of intracellular dynamic processes in time-lapse fluorescence microscopy images requires complete and accurate tracking of all small particles in all time frames of the image sequences. A fundamental first step towards…

Image and Video Processing · Electrical Eng. & Systems 2024-08-16 Yao Yao , Ihor Smal , Ilya Grigoriev , Anna Akhmanova , Erik Meijering

Deep-neural-network-based image reconstruction has demonstrated promising performance in medical imaging for under-sampled and low-dose scenarios. However, it requires large amount of memory and extensive time for the training. It is…

Computer Vision and Pattern Recognition · Computer Science 2019-06-12 Dufan Wu , Kyungsang Kim , Quanzheng Li

Optimized sensing is important for computational imaging in low-resource environments, when images must be recovered from severely limited measurements. In this paper, we propose a physics-constrained, fully differentiable, autoencoder that…

Image and Video Processing · Electrical Eng. & Systems 2020-03-24 He Sun , Adrian V. Dalca , Katherine L. Bouman

Layout hotpot detection is one of the main steps in modern VLSI design. A typical hotspot detection flow is extremely time consuming due to the computationally expensive mask optimization and lithographic simulation. Recent researches try…

Machine Learning · Computer Science 2018-07-18 Haoyu Yang , Shuhe Li , Cyrus Tabery , Bingqing Lin , Bei Yu

In medical imaging, scans often reveal objects with varied contrasts but consistent internal intensities or textures. This characteristic enables the use of low-frequency approximations for tasks such as segmentation and deformation field…

Image and Video Processing · Electrical Eng. & Systems 2024-01-19 Hang Zhang , Xiang Chen , Rongguang Wang , Renjiu Hu , Dongdong Liu , Gaolei Li

Filament identification became a key step to tackling fundamental problems in various fields of Astronomy. Nevertheless, existing filament identification algorithms are critically user-dependent and require individual parametrization. In…

Instrumentation and Methods for Astrophysics · Physics 2022-07-22 D. Alina , A. Shomanov , S. Baimukhametova

Is it possible to build a system to determine the location where a photo was taken using just its pixels? In general, the problem seems exceptionally difficult: it is trivial to construct situations where no location can be inferred. Yet…

Computer Vision and Pattern Recognition · Computer Science 2017-02-09 Tobias Weyand , Ilya Kostrikov , James Philbin

Deep neural networks trained for classification have been found to learn powerful image representations, which are also often used for other tasks such as comparing images w.r.t. their visual similarity. However, visual similarity does not…

Computer Vision and Pattern Recognition · Computer Science 2019-07-24 Björn Barz , Joachim Denzler

Photovoltaic cells are electronic devices that convert light energy to electricity, forming the backbone of solar energy harvesting systems. An essential step in the manufacturing process for photovoltaic cells is visual quality inspection…

Image and Video Processing · Electrical Eng. & Systems 2022-04-26 Carol Xu , Mahmoud Famouri , Gautam Bathla , Saeejith Nair , Mohammad Javad Shafiee , Alexander Wong

The advancement of the neuroscientific imaging techniques has produced an unprecedented size of neural cell imaging data, which calls for automated processing. In particular, identification of cells from two photon images demands…

Image and Video Processing · Electrical Eng. & Systems 2019-09-26 Si-Baek Seong , Hae-Jeong Park

The non-uniform photoelectric response of infrared imaging systems results in fixed-pattern stripe noise being superimposed on infrared images, which severely reduces image quality. As the applications of degraded infrared images are…

Image and Video Processing · Electrical Eng. & Systems 2022-09-30 Zeshan Fayyaz , Daniel Platnick , Hannan Fayyaz , Nariman Farsad

Imaging assays of cellular function, especially those using fluorescent stains, are ubiquitous in the biological and medical sciences. Despite advances in computer vision, such images are often analyzed using only manual or rudimentary…

Computer Vision and Pattern Recognition · Computer Science 2017-06-06 Lena R. Bartell , Lawrence J. Bonassar , Itai Cohen

In this work, we propose a self-supervised learning method for affine image registration on 3D medical images. Unlike optimisation-based methods, our affine image registration network (AIRNet) is designed to directly estimate the…

Computer Vision and Pattern Recognition · Computer Science 2018-10-16 Evelyn Chee , Zhenzhou Wu

Capsule Networks (CapsNets) is a machine learning architecture proposed to overcome some of the shortcomings of convolutional neural networks (CNNs). However, CapsNets have mainly outperformed CNNs in datasets where images are small and/or…

Computer Vision and Pattern Recognition · Computer Science 2021-09-07 Juan P. Vigueras-Guillén , Arijit Patra , Ola Engkvist , Frank Seeliger

Fluorescence microscopy allows for a detailed inspection of cells, cellular networks, and anatomical landmarks by staining with a variety of carefully-selected markers visualized as color channels. Quantitative characterization of…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Alvaro Gomariz , Tiziano Portenier , Patrick M. Helbling , Stephan Isringhausen , Ute Suessbier , César Nombela-Arrieta , Orcun Goksel

Efficient single instance segmentation is essential for unlocking features in the mobile imaging applications, such as capture or editing. Existing on-the-fly mobile imaging applications scope the segmentation task to portraits or the…

Computer Vision and Pattern Recognition · Computer Science 2025-08-28 Mingyuan Wu , Zichuan Liu , Haozhen Zheng , Hongpeng Guo , Bo Chen , Xin Lu , Klara Nahrstedt