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In recent years, simulation methods based on the scaling of atomic potential functions, such as quasi-coarse-grained dynamics and coarse-grained dynamics, have shown promising results for modeling crystalline systems at multiple scales.…

Mesoscale and Nanoscale Physics · Physics 2024-09-11 Dong-Dong Jiang , Jian-Li Shao

Acid ionization in aprotic media is studied using Molecular Dynamics techniques. In particular, models for HCl ionization in acetonitrile and dimethylsulfoxide are investigated. The proton is treated quantum mechanically using Feynman path…

chem-ph · Physics 2009-10-28 Daniel Laria , Raymond Kapral , Dario Estrin , Giovanni Ciccotti

New results for the strength of the symmetry energy are presented which illustrate the complementary aspects encountered in reactions probing nuclear densities below and above saturation. A systematic study of isotopic effects in spectator…

The dynamics of soft colloids in solutions is characterized by internal collective motion as well as center-of-mass diffusion. Using neutron scattering we demonstrate that the competition between the relaxation processes associated with…

In transitions between different environmental settings, a molecular system inevitably undergoes a range of detectable changes, and the ability to accurately simulate such responses, e.g., in the form of shifts to molecular energies,…

Chemical Physics · Physics 2026-01-14 Kasper F. Schaltz , Jonas Greiner , Filippo Lipparini , Janus J. Eriksen

We have implemented vibronic dynamics for simulations of the third order coherent response of electronic dimers. In the present communication we provide the full and detailed description of the dynamical model, recently used for simulations…

Chemical Physics · Physics 2017-08-31 Václav Perlík , František Šanda

We review recent work on active colloids or swimmers, such as self-propelled microorganisms, phoretic colloidal particles, and artificial micro-robotic systems, moving in fluid-like environments. These environments can be water-like and…

Biological Physics · Physics 2016-02-09 Alison E. Patteson , Arvind Gopinath , Paulo E. Arratia

A thorough understanding of neutrino-nucleus interactions physics is crucial to achieving precision goals in broader neutrino physics programs. The complexity of nuclei comprising the detectors and limited understanding of their weak…

High Energy Physics - Experiment · Physics 2023-06-12 V. Pandey

Molecular dynamics (MD) is a widely-used tool for simulating the molecular and materials properties. It is a common wisdom that molecular dynamics simulations should obey physical laws and, hence, lots of effort is put into ensuring that…

Chemical Physics · Physics 2023-08-23 Lina Zhang , Yi-Fan Hou , Fuchun Ge , Pavlo O. Dral

We explore the effects of composition and temperature on the apparent molar volumes of species of water-methanol mixtures. Isothermal-isobaric molecular dynamics simulations are used with this purpose. Several combinations of models for…

Soft Condensed Matter · Physics 2021-01-20 M. Cruz Sanchez , M. Aguilar , O. Pizio

In this paper, the authors discuss neutron-proton equilibration process induced on the 70Zn + 70Zn system at 35 MeV/nucleon, comparing experimental results with the Anti-symmetrized Molecular Dynamics and the Constrained Molecular Dynamics…

Nuclear Theory · Physics 2024-10-30 Massimo Papa

Collective motion in actively propelled particle systems is triggered on the very local scale by nucleation of coherently moving units consisting of just a handful of particles. These units grow and merge over time, ending up in a…

Soft Condensed Matter · Physics 2013-11-26 Timo Hanke , Christoph A. Weber , Erwin Frey

We study the interaction of atomic and molecular hydrogen with a surface of tholin, a man-made polymer considered to be an analogue of aerosol particles present in Titan's atmosphere, using thermal programmed desorption at low temperatures…

Earth and Planetary Astrophysics · Physics 2010-10-08 Ling Li , Hui Zhao , Gianfranco Vidali , Yechiel Frank , Ingo Lohmar , Hagai B. Perets , Ofer Biham

We report a high energy-resolution neutron backscattering study, combined with in-situ diffraction, to investigate slow molecular motions on nanosecond time scales in the fluid phase of phospholipid bilayers of…

Biological Physics · Physics 2009-10-02 Maikel C. Rheinstadter , Jhuma Das , Elijah J. Flenner , Beate Bruening , Tilo Seydel , Ioan Kosztin

The evaluation of collective modes is fundamental in the analysis of molecular dynamics simulations. Several methods are available to extract that information, i.e normal mode analysis, principal component and spectral analysis of…

Computational Physics · Physics 2017-09-11 Vito Dario Camiola , Valentina Tozzini

Collective behaviour in suspensions of microswimmers is often dominated by the impact of long-ranged hydrodynamic interactions. These phenomena include active turbulence, where suspensions of pusher bacteria at sufficient densities exhibit…

Soft Condensed Matter · Physics 2019-08-27 Dora Bardfalvy , Henrik Nordanger , Cesare Nardini , Alexander Morozov , Joakim Stenhammar

Aqueous solid-liquid interfaces (SLI) are ubiquitous in nature and technology, often hosting molecular-level processes with macroscopic consequences. Molecular dynamics (MD) simulations offer a tool of choice to investigate interfacial…

Soft Condensed Matter · Physics 2025-08-12 Mahdi Tavakol , Kislon Voïtchovsky

In this work, the memory equation approach is applied for theoretical study of dynamics of polar molecular liquids described by the interaction site model. The study includes the temperature-density(pressure) dependence of the translational…

Chemical Physics · Physics 2007-05-23 A. E. Kobryn , T. Yamaguchi , F. Hirata

Selected results of a classical simulation of N bodies in strong interaction are presented. The static properties of such classical systems are qualitatively similar to the known properties of atomic nuclei. The simulations of collisions…

Nuclear Theory · Physics 2009-11-07 D. Cussol

We propose a general variance reduction strategy for diffusion processes. Our approach does not require the knowledge of the measure that is sampled, which may indeed be unknown as for nonequilibrium dynamics in statistical physics. We show…

Numerical Analysis · Mathematics 2019-01-29 Julien Roussel , Gabriel Stoltz