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The interplay between humans and Generative AI (Gen AI) draws an insightful parallel with the dynamic relationship between giraffes and acacias on the African Savannah. Just as giraffes navigate the acacia's thorny defenses to gain…

Artificial Intelligence · Computer Science 2024-07-17 Waqar Hussain

Differences in the regional substitution patterns in the human genome created patterns of large-scale variation of base composition known as genomic isochores. To gain insight into the origin of the genomic isochores we develop a maximum…

Statistical Mechanics · Physics 2007-05-23 Peter F. Arndt , Dmitri A. Petrov , Terence Hwa

Most of the DNA that composes a complex organism is non-coding and defined as junk. Even the coding part is composed of genes that affect the phenotype differently. Therefore, a random mutation has an effect on the specimen fitness that…

Populations and Evolution · Quantitative Biology 2021-07-19 Mattia Miotto , Lorenzo Monacelli

The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal…

Anthropogenic changes of the biota and human hyper-dominance are modulating the evolution of life on our planet. Humankind has spread worldwide supported by cultural and technological knowledge, and has already modified uncountable…

Populations and Evolution · Quantitative Biology 2018-12-17 Pablo J. F. Pena Rodrigues , Catarina Fonseca Lira

The question of what determines genetic diversity both between and within species has long remained unsolved by the modern evolutionary theory (MET). However, it has not deterred researchers from producing interpretations of genetic…

Populations and Evolution · Quantitative Biology 2019-04-04 Shi Huang

Growth in brain volume is one of the most spectacular changes in the hominid lineage. The anthropological community agrees on that point. No consensus, however, has been reached on selection pressures contributing to that growth. In that…

Populations and Evolution · Quantitative Biology 2013-12-20 Konrad R. Fialkowski

We study a population of $N$ individuals evolving according to a biparental Moran model with two types, one being advantaged compared to the other. The advantage is conferred by a Mendelian mutation, which reduces the death probability of…

Probability · Mathematics 2026-03-24 Camille Coron , Yves Le Jan

Horseshoe crabs are marine arthropods with a fossil record extending back approximately 450 million years. They exhibit remarkable morphological stability over their long evolutionary history, retaining a number of ancestral arthropod…

Genomics · Quantitative Biology 2014-06-19 Carlos Nossa , Paul Havlak , Jia-Xing Yue , Jie Lv , Kim Vincent , H Jane Brockmann , Nicholas H Putnam

Sex chromosomes have evolved repeatedly across the Tree of Life, yet their evolutionary fates differ strikingly. In sharp contrast to mammals and birds with degenerated, stable Y/W chromosomes, in most amphibians, teleosts, non avian…

Populations and Evolution · Quantitative Biology 2026-03-24 Wen-Juan Ma , Ricard Fontserè , Tristan Cornelis , Paris Veltsos , Qi Zhou

Considering that life on earth evolved about 3.7 billion years ago, vertebrates are young, appearing in the fossil record during the Cambrian explosion about 542 to 515 million years ago. Results from sequence analyses of genomes from…

Molecular Networks · Quantitative Biology 2019-04-22 Michael E. Baker

How genes affect tissue scale organization remains a longstanding biological puzzle. As experimental efforts aim to quantify gene expression, chromatin organization, cellular structure, and tissue structure, computational modeling lags…

Tissues and Organs · Quantitative Biology 2025-03-04 Tao Zhang , Sarthak Gupta , Madeline A. Lancaster , J. M. Schwarz

In a population with haploid reproduction any individual has a single parent in the previous generation. If all genealogical distances among pairs of individuals (generations from the closest common ancestor) are known it is possible to…

Populations and Evolution · Quantitative Biology 2015-05-13 Luce Prignano , Maurizio Serva

In genetically admixed populations, admixed individuals possess ancestry from multiple source groups. Studies of human genetic admixture frequently estimate ancestry components corresponding to fractions of individual genomes that trace to…

Populations and Evolution · Quantitative Biology 2022-10-25 Jazlyn A. Mooney , Lily Agranat-Tamir , Jonathan K. Pritchard , Noah A. Rosenberg

Protoclusters, galaxy clusters' high redshift progenitors, hold the keys to understanding the formation and evolution of clusters and their member galaxies. However, their cosmological distances and spatial extensions (tens of Mpc) have…

The X chromosome is present as a single copy in the heterogametic sex, and this hemizygosity is expected to drive unusual patterns of evolution on the X relative to the autosomes. For example, the hemizgosity of the X may lead to a lower…

Populations and Evolution · Quantitative Biology 2015-03-20 Melek A. Kayserili , Dave T. Gerrard , Pavel Tomancak , Alex T. Kalinka

During the course of evolution, an organism's genome can undergo changes that affect the large-scale structure of the genome. These changes include gene gain, loss, duplication, chromosome fusion, fission, and rearrangement. When gene gain…

Genomics · Quantitative Biology 2012-07-31 Birte Kehr , Knut Reinert , Aaron E. Darling

The usefulness of a `total-evidence' approach to human population genetics was assessed through a clustering analysis of combined genome-wide SNP datasets. The combination contained only 3146 SNPs. Detailed examination of the results…

Populations and Evolution · Quantitative Biology 2012-12-07 Blaise Li

More than any other species, humans form social ties to individuals who are neither kin nor mates, and these ties tend to be with similar people. Here, we show that this similarity extends to genotypes. Across the whole genome, friends'…

Genomics · Quantitative Biology 2014-12-05 Nicholas A. Christakis , James H. Fowler

Genetic association data from national biobanks and large-scale association studies have provided new prospects for understanding the genetic evolution of complex traits and diseases in humans. In turn, genomes from ancient human…

Populations and Evolution · Quantitative Biology 2021-08-06 Evan K. Irving-Pease , Rasa Muktupavela , Michael Dannemann , Fernando Racimo