English
Related papers

Related papers: Synthesis for Vesicle Traffic Systems

200 papers

We use particle dynamics simulations to probe the correlations between noise and dynamics in a variety of disordered systems, including superconducting vortices, 2D electron liquid crystals, colloids, domain walls, and granular media. The…

Superconductivity · Physics 2009-11-10 C. J. Olson Reichhardt , C. Reichhardt

The electron beam with a virtual cathode (VC) in the drift tube is investigated with the help of a 1.5-dimensional relativistic electromagnetic code. The existence of complex modes, including chaotic modes,is demonstrated. The dynamic…

Plasma Physics · Physics 2007-05-23 Alexander Hramov

Quantum state tomography (QST) is a central task for quantum information processing, enabling quantum cryptography, computation, and state certification. Traditional QST relies on projective measurements of single- and two-qubit Pauli…

Quantum Physics · Physics 2026-03-17 Jeanne Bourgeois , Gianmichele Blasi , Géraldine Haack

Traffic-like collective movements are observed at almost all levels of biological systems. Molecular motor proteins like, for example, kinesin and dynein, which are the vehicles of almost all intra-cellular transport in eukayotic cells,…

Biological Physics · Physics 2008-01-16 Debashish Chowdhury , Andreas Schadschneider , Katsuhiro Nishinari

Mechanistic interpretability seeks to uncover how internal components of neural networks give rise to predictions. A persistent challenge, however, is disentangling two often conflated notions: decodability--the recoverability of…

Machine Learning · Computer Science 2025-10-14 Lianghuan Huang , Yingshan Chang

Many transport processes in nature take place on substrates, often considered as unidimensional lanes. These unidimensional substrates are typically non-static: affected by a fluctuating environment, they can undergo conformational changes.…

Statistical Mechanics · Physics 2013-01-11 Francesco Turci , Andrea Parmeggiani , Estelle Pitard , M. Carmen Romano , Luca Ciandrini

The interplay of chemotaxis and diffusion of nutrients or signaling chemicals in bacterial suspensions can produce a variety of structures with locally high concentrations of cells, including phyllotactic patterns, filaments, and…

Analysis of PDEs · Mathematics 2026-05-05 Bolun Li , Fengqiang Shi , Wendong Wang

Urban transportation networks face significant challenges due to traffic congestion, leading to adverse environmental and socioeconomic impacts. Vehicular admission control (VAC) strategies have emerged as a promising solution to alleviate…

Optimization and Control · Mathematics 2026-01-15 Michalis Ramp , Andreas Kasis , Stelios Timotheou

In applying Vibration-Transit (V-T) theory of liquid dynamics to the thermodynamic properties of monatomic liquids, the point has been reached where an improved model is needed for the small (approx. 10%) transit contribution. Toward this…

Soft Condensed Matter · Physics 2010-04-22 Duane C. Wallace , Eric D. Chisolm , N. Bock , G. De Lorenzi-Venneri

In this work, we propose a novel approach for the continuous-time control synthesis of nonlinear systems under nested signal temporal logic (STL) specifications. While the majority of existing literature focuses on control synthesis for STL…

Systems and Control · Electrical Eng. & Systems 2024-01-24 Pian Yu , Xiao Tan , Dimos V. Dimarogonas

We study the dynamics of membrane vesicle motor transport into dendritic spines, which are bulbous intracellular compartments in neurons that play a key role in transmitting signals between neurons. We consider the stochastic analog of the…

Subcellular Processes · Quantitative Biology 2022-05-17 Youngmin Park , Prashant Singh , Thomas G. Fai

Vorticity and vortex are two different but related concepts. This paper focuses on the investigation of vorticity generation and development, and vorticity structure inside/ outside the vortex. Vortex is a region where the vorticity…

Fluid Dynamics · Physics 2018-11-14 Xiangrui Dong , Shuling Tian , Chaoqun Liu

We develop an agent-based model of vasculogenesis, the de novo formation of blood vessels. Endothelial cells in the vessel network are viewed as linearly elastic spheres and are of two types: vessel elements are contained within the…

Quantitative Methods · Quantitative Biology 2016-10-04 Holger Perfahl , Barry D Hughes , Tomas Alaracon , Philip K Maini , Mark C Lloyd , Matthias Reuss , Helen M Byrne

There are many systems in different subjects such as industry, medicine, transport, social and others, can be discribed on their dynamic of flows. Nowadays models of flows consist of micro- and macro-models. In practice there is a problem…

Other Computer Science · Computer Science 2015-12-04 Anton Aristov

The transport of deformable particles through porous media underlies a wealth of applications ranging from filtration to oil recovery to the transport and spreading of biological agents. Using direct numerical simulations, we analyze the…

Soft Condensed Matter · Physics 2020-06-09 Brato Chakrabarti , Charles Gaillard , David Saintillan

Understanding transport processes in complex nanoscale systems, like ionic conductivities in nanofluidic devices or heat conduction in low dimensional solids, poses the problem of examining fluctuations of currents within nonequilibrium…

Mesoscale and Nanoscale Physics · Physics 2021-08-04 David T. Limmer , Chloe Y. Gao , Anthony R. Poggioli

Purpose: The goal of this article is to introduce a technique to measure the velocity distribution of water inside each voxel of an MR image. The method is based on the use of motion sensitizing gradients with changing first moment to…

Quantitative Methods · Quantitative Biology 2025-12-02 Luis Hernandez-Garcia , Alberto L. Vazquez , Doug C. Noll

The viscous shock tube is a canonical test case for assessing Navier-Stokes (NS) solvers in the continuum-flow regime, widely used to validate numerical accuracy and probe flow physics. It features a rich set of interacting structures-shock…

Fluid Dynamics · Physics 2026-04-28 Yue Zhang , Kun Xu

The rarefied flow and multi-scale flow are crucial for the aerodynamic design of spacecraft, ultra-low orbital vehicles and plumes. By introducing a discrete velocity space, the Boltzmann method, such as the discrete velocity method and…

Fluid Dynamics · Physics 2025-04-07 Jianfeng Chen , Sha Liu , Rui Zhang , Chengwen Zhong , Yanguang Yang , Congshan Zhuo

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt