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This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

The study of Molecular Communication(MC) is more and more prevalence, and channel model of MC plays an important role in the MC System. Since different propagation environment and modulation techniques produce different channel model, most…

Emerging Technologies · Computer Science 2016-03-14 Pengfei Lu , Yang You , Bo Liu , Zhenqiang Wu

To communicate at the nanoscale, researchers have proposed molecular communication as an energy-efficient solution. The drawback to this solution is that the histogram of the molecules' hitting times, which constitute the molecular signal…

Emerging Technologies · Computer Science 2018-08-21 Bayram Cevdet Akdeniz , Nafi Ahmet Turgut , H. Birkan Yilmaz , Chan-Byoung Chae , Tuna Tugcu , Ali Emre Pusane

Molecular communication emerges as a promising communication paradigm for nanotechnology. However, solid mathematical foundations for information-theoretic analysis of molecular communication have not yet been built. In particular, no one…

Information Theory · Computer Science 2013-11-19 Ya-Ping Hsieh , Ping-Cheng Yeh

Molecular communication (MC) is a bio-inspired method of transmitting information using biochemical signals, promising for novel medical, agricultural, and environmental applications at the intersection of bio-, nano-, and communication…

Emerging Technologies · Computer Science 2024-08-20 Eren Akyol , Ahmet Baha Ozturk , Iman Mokari Bolhassan , Murat Kuscu

A biofilm is a microbial city. It consists of bacteria embedded in an extracellular polymeric substance (EPS) that functions as a protective barrier. Quorum sensing (QS) is a method of bacterial communication, where autoinducers (AIs)…

Signal Processing · Electrical Eng. & Systems 2024-08-15 Yanahan Paramalingam , Hamidreza Arjmandi , Freya Harrison , Tara Schiller , Adam Noel

Molecular Communication (MC) is an emerging field of research focused on understanding how cells in the human body communicate and exploring potential medical applications. In theoretical analysis, the goal is to investigate cellular…

Information Theory · Computer Science 2025-12-19 Wafa Labidi , Vida Gholamian , Yaning Zhao , Christian Deppe , Holger Boche

Molecular communication often involves coexisting links where certain links may have priority over others. In this work, we consider a system in three-dimensional (3-D) space with two coexisting communication links, each between a point…

Information Theory · Computer Science 2021-02-12 Nithin V. Sabu , Neeraj Varshney , Abhishek K. Gupta

Molecular communication is an expanding body of research. Recent advances in biology have encouraged using genetically engineered bacteria as the main component in the molecular communication. This has stimulated a new line of research that…

Information Theory · Computer Science 2012-09-13 Arash Einolghozati , Mohsen Sardari , Faramarz Fekr

We present a model for diffusion in a molecularly crowded environment. The model consists of random barriers in percolation network. Random walks in the presence of slowly moving barriers show normal diffusion for long times, but anomalous…

Subcellular Processes · Quantitative Biology 2007-06-06 Dietrich Stauffer , Christian Schulze , Dieter W. Heermann

A molecule traveling in a realistic propagation environment can experience stochastic interactions with other molecules and the environment boundary. The statistical behavior of some isolated phenomena, such as dilute unbounded molecular…

Chemical Physics · Physics 2015-05-20 Adam Noel , Karen C. Cheung , Robert Schober

In this paper, we develop a mathematical framework for modeling the time-variant stochastic channels of diffusive mobile MC systems. In particular, we consider a diffusive mobile MC system consisting of a pair of transmitter and receiver…

Information Theory · Computer Science 2018-07-12 Arman Ahmadzadeh , Vahid Jamali , Robert Schober

This paper proposes a method for accurately estimating the relative position between two nodes with unknown locations in a diffusion-based molecular communication environment. A specialized node structure is designed, combining a central…

Signal Processing · Electrical Eng. & Systems 2025-09-10 Sangjun Hwang , Chan-Byoung Chae

In this paper, diffusion-based molecular commu- nication with ligand receptor receivers is studied. Information messages are assumed to be encoded via variations of the con- centration of molecules. The randomness in the ligand reception…

Information Theory · Computer Science 2015-11-10 Mehrdad Tahmasbi , Faramarz Fekri

We consider molecular communication networks consisting of transmitters and receivers distributed in a fluidic medium. In such networks, a transmitter sends one or more signalling molecules, which are diffused over the medium, to the…

Computational Engineering, Finance, and Science · Computer Science 2015-03-20 Chun Tung Chou

The reversible reactions like A+B <-> C in the many-component diffusive system affect the diffusive properties of the constituents. The effective conjugation of irreversible processes of different dimensionality takes place due to the…

Other Condensed Matter · Physics 2007-05-23 Serge Shpyrko , Vladimir M. Sysoev

Diffusion is the macroscopic manifestation of disordered molecular motion. Mathematically, diffusion equations are partial differential equations describing the fluid-like large-scale dynamics of parcels of molecules. Spatially…

Fluid Dynamics · Physics 2018-10-26 F. Sattin , A. Bonato , L. Salasnich

Information delivery using chemical molecules is an integral part of biology at multiple distance scales and has attracted recent interest in bioengineering and communication theory. Potential applications include cooperative networks with…

Information Theory · Computer Science 2017-09-05 Yansha Deng , Adam Noel , Weisi Guo , Arumugam Nallanathan , Maged Elkashlan

We present a general mechanistic model of mass diffusion for a composite sphere placed in a large ambient medium. The multi-layer problem is described by a system of diffusion equations coupled via interlayer boundary conditions such as…

Medical Physics · Physics 2018-01-17 Elliot J. Carr , Giuseppe Pontrelli

We present a multiscale approach to model diffusion in a crowded environment and its effect on the reaction rates. Diffusion in biological systems is often modeled by a discrete space jump process in order to capture the inherent noise of…

Subcellular Processes · Quantitative Biology 2016-03-18 Lina Meinecke
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