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Motivated by results of Henry, Pralat and Zhang (PNAS 108.21 (2011): 8605-8610), we propose a general scheme for evolving spatial networks in order to reduce their total edge lengths. We study the properties of the equilbria of two networks…

Physics and Society · Physics 2014-07-17 Chris Varghese , Rick Durrett

In this contribution, we have considered the collective behavior of the two as well as the network of heterogeneous coupled Hindmarsh Rose (HR) neurons. The heterogeneous models were made of a memristive 2D (HR) and the traditional 3D HR…

Neurons and Cognition · Quantitative Biology 2023-02-24 Zeric Tabekoueng Njitacke , Sishu Shankar Muni , Soumyajit Seth , Jan Awrejcewicz , Jacques Kengne

Understanding the evolution of cellular microenvironments in spatiotemporal data is essential for deciphering tissue development and disease progression. While experimental techniques like spatial transcriptomics now enable high-resolution…

Machine Learning · Computer Science 2025-12-29 Kristiyan Sakalyan , Alessandro Palma , Filippo Guerranti , Fabian J. Theis , Stephan Günnemann

Air transport systems are highly dynamic at temporal scales from minutes to years. This dynamic behavior not only characterizes the evolution of the system but also affect the system's functioning. Understanding the evolutionary mechanisms…

Physics and Society · Physics 2016-05-17 Luis Enrique Correa Rocha

A new model of neural networks described by the memristive and diffusive Hindmarsh-Rose equations is proposed. Globally dissipative dynamics is shown with absorbing sets in the state spaces. Through sharp and uniform grouping estimates and…

Analysis of PDEs · Mathematics 2023-01-03 Yuncheng You

The nematode Caenorhabditis elegans, with information on neural connectivity, three-dimensional position and cell linage provides a unique system for understanding the development of neural networks. Although C. elegans has been widely…

Biological Physics · Physics 2011-01-17 Sreedevi Varier , Marcus Kaiser

Neural networks rely on learning synaptic weights. However, this overlooks other neural parameters that can also be learned and may be utilized by the brain. One such parameter is the delay: the brain exhibits complex temporal dynamics with…

Neural and Evolutionary Computing · Computer Science 2025-11-03 Pengfei Sun , Jascha Achterberg , Zhe Su , Dan F. M. Goodman , Danyal Akarca

Signal transduction networks can form highly interconnected systems within cells due to network crosstalk, the sharing of input signals between multiple downstream responses. To better understand the evolutionary design principles…

Biological Physics · Physics 2018-02-14 Ammar Tareen , Ned S. Wingreen , Ranjan Mukhopadhyay

Network embeddings learn to represent nodes as low-dimensional vectors to preserve the proximity between nodes and communities of the network for network analysis. The temporal edges (e.g., relationships, contacts, and emails) in dynamic…

Social and Information Networks · Computer Science 2019-06-25 Chuanchang Chen , Yubo Tao , Hai Lin

In a series of two papers, we investigate the large deviations and asymptotic behavior of stochastic models of brain neural networks with random interaction coefficients. In this first paper, we take into account the spatial structure of…

Probability · Mathematics 2017-01-05 Tanguy Cabana , Jonathan Touboul

Spatial and temporal resource constraints are critical for both biological and artificial intelligent systems. Here we define differentiable cost terms for breadth, depth, and time within a recurrent convolutional neural network conceived…

Neurons and Cognition · Quantitative Biology 2026-05-26 Eivinas Butkus , Kedar Garzón Gupta , Nikolaus Kriegeskorte

Models of neural networks have proven their utility in the development of learning algorithms in computer science and in the theoretical study of brain dynamics in computational neuroscience. We propose in this paper a spatial neural…

Neural and Evolutionary Computing · Computer Science 2014-05-06 Lucas Antiqueira , Liang Zhao

Like other social animals and biological systems, human groups constantly exchange information. Network models provide a way of quantifying this process by representing the pathways of information propagation between individuals. Existing…

Social and Information Networks · Computer Science 2024-10-18 Niek Kerssies , Jose Segovia Martin , James Winters

Networks embedded in space can display all sorts of transitions when their structure is modified. The nature of these transitions (and in some cases crossovers) can differ from the usual appearance of a giant component as observed for the…

Statistical Mechanics · Physics 2018-12-19 Marc Barthelemy

The plasticity of the conduction delay between neurons plays a fundamental role in learning. However, the exact underlying mechanisms in the brain for this modulation is still an open problem. Understanding the precise adjustment of…

Neural and Evolutionary Computing · Computer Science 2020-11-19 Alireza Nadafian , Mohammad Ganjtabesh

A fundamental understanding of the network architecture of the brain is necessary for the further development of theories explicating circuit function. Perhaps as a derivative of its initial application to abstract informational systems,…

Neurons and Cognition · Quantitative Biology 2018-07-13 Jennifer Stiso , Danielle Bassett

Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

Tissues and Organs · Quantitative Biology 2019-02-14 Melinda Liu Perkins , Murat Arcak

Mathematical modeling is an important tool to study the role of delay in neural systems and to evaluate its effects on the signaling activity of coupled neurons. Models for delayed neurons are often used to represent the dynamics of real…

Neurons and Cognition · Quantitative Biology 2022-04-27 Abdelmalik Moujahid , Fernando Vadillo

Spiking Neural Networks (SNNs) have the potential for rich spatio-temporal signal processing thanks to exploiting both spatial and temporal parameters. The temporal dynamics such as time constants of the synapses and neurons and delays have…

Neural and Evolutionary Computing · Computer Science 2024-07-29 Filippo Moro , Pau Vilimelis Aceituno , Laura Kriener , Melika Payvand

The identification and modeling of time-varying systems is a fundamental challenge in signal processing and system identification. To address this challenge, we propose a class of time-varying state-space model (SSM) based neural networks…

Machine Learning · Computer Science 2026-05-18 Sanja Karilanova , Subhrakanti Dey , Ayça Özçelikkale