Related papers: Longest Property-Preserved Common Factor
A decision problem is called parameterized if its input is a pair of strings. One of these strings is referred to as a parameter. The problem: given a propositional logic program P and a non-negative integer k, decide whether P has a stable…
Suffix sort plays a critical role in various computational algorithms including genomics as well as in frequently used day to day software applications. The sorting algorithm becomes tricky when we have lot of repeated characters in the…
This paper studies optimal estimation of large-dimensional nonlinear factor models. The key challenge is that the observed variables are possibly nonlinear functions of some latent variables where the functional forms are left unspecified.…
We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…
Let $f(x)$ be a square free quartic polynomial defined over a quadratic field $K$ such that its leading coefficient is a square. If the continued fraction expansion of $\displaystyle \sqrt{f(x)}$ is periodic, then its period $n$ lies in the…
In this paper, we analyze the periodic factors of Sturmian words for the findings to lead to a linear-time algorithm for the computation of runs in this class of words which, to our best knowledge, is an open problem in literature.
Regularities in strings are often related to periods and covers, which have extensively been studied, and algorithms for their efficient computation have broad application. In this paper we concentrate on computing cyclic regularities of…
The polynomial-time computability of the permanent over fields of characteristic 3 for k-semi-unitary matrices (i.e. square matrices such that the differences of their Gram matrices and the corresponding identity matrices are of rank k) in…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
We consider the numerical taxonomy problem of fitting a positive distance function ${D:{S\choose 2}\rightarrow \mathbb R_{>0}}$ by a tree metric. We want a tree $T$ with positive edge weights and including $S$ among the vertices so that…
We survey three methods for proving that the characteristic polynomial of a finite lattice factors over the nonnegative integers and indicate how they have evolved recently. The first technique uses geometric ideas and is based on…
We evaluate the influence of different alphabet orderings on the Lyndon factorization of a string. Experiments with Pizza & Chili datasets show that for most alphabet reorderings, the number of Lyndon factors is usually small, and the…
The existence of string functions, which are not polynomial time computable, but whose graph is checkable in polynomial time, is a basic assumption in cryptography. We prove that in the framework of algebraic complexity, there are no such…
The Longest Common Subsequence (LCS) of two strings is a fundamental string similarity measure with a classical dynamic programming solution taking quadratic time. Despite significant efforts, little progress was made in improving the…
The NP-hard general factor problem asks, given a graph and for each vertex a list of integers, whether the graph has a spanning subgraph where each vertex has a degree that belongs to its assigned list. The problem remains NP-hard even if…
The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…
We say a string has a cadence if a certain character is repeated at regular intervals, possibly with intervening occurrences of that character. We call the cadence anchored if the first interval must be the same length as the others. We…
In this paper, we consider the fault-tolerant $k$-median problem and give the \emph{first} constant factor approximation algorithm for it. In the fault-tolerant generalization of classical $k$-median problem, each client $j$ needs to be…
In this work we consider morphisms that preserve well-known non-repeating properties: squarefreeness, cubefreeness, overlap-freeness and weak squarefreeness. Up to the present moment only the morphisms preserving three out of four…
We generalize the classical theory of periodic continued fractions (PCFs) over ${\mathbf Z}$ to rings ${\mathcal O}$ of $S$-integers in a number field. Let ${\mathcal B}=\{\beta, {\beta^*}\}$ be the multi-set of roots of a quadratic…