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An adaptive multi grid approach to simulating the formation of structure from collisionless dark matter is described. MLAPM (Multi-Level Adaptive Particle Mesh) is one of the most efficient serial codes available on the cosmological…

We describe and implement an adaptive particle-mesh algorithm to solve the Poisson equation for grid-based hydrodynamics codes with nested grids. The algorithm is implemented and extensively tested within the astrophysical code Enzo against…

Instrumentation and Methods for Astrophysics · Physics 2015-06-23 Jean-Claude Passy , Greg L. Bryan

Cosmography is a phenomenological and relatively model-independent approach to cosmology, where physical quantities are expanded as a Taylor series in the cosmological redshift, or in related variables. Here we apply this methodology to…

Cosmology and Nongalactic Astrophysics · Physics 2022-03-08 C. J. A. P. Martins , F. P. S. A. Ferreira , P. V. Marto

The applications being developed within the U.S. Exascale Computing Project (ECP) to run on imminent Exascale computers will generate scientific results with unprecedented fidelity and record turn-around time. Many of these codes are based…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-04 Lipeng Wan , Axel Huebl , Junmin Gu , Franz Poeschel , Ana Gainaru , Ruonan Wang , Jieyang Chen , Xin Liang , Dmitry Ganyushin , Todd Munson , Ian Foster , Jean-Luc Vay , Norbert Podhorszki , Kesheng Wu , Scott Klasky

Numerical heating in particle-in-cell (PIC) codes currently precludes the accurate simulation of cold, relativistic plasma over long periods, severely limiting their applications in astrophysical environments. We present a spatially…

Current and upcoming cosmological experiments open a new era of precision cosmology, thus demanding accurate theoretical predictions for cosmological observables. Because of the complexity of the codes delivering such predictions, reaching…

Cosmology and Nongalactic Astrophysics · Physics 2020-05-05 F. Tarsitano , U. Schmitt , A. Refregier , J. Fluri , R. Sgier , A. Nicola , J. Herbel , A. Amara , T. Kacprzak , L. Heisenberg

In the era of precision cosmology, even percentage level effects are significant on cosmological observables. The recent tension between the local and global values of $H_0$ is much more significant than this, and any possible solution…

Cosmology and Nongalactic Astrophysics · Physics 2019-05-29 Alan A. Coley , Beethoven Santos , Viraj A A Sanghai

We present a collection of new, open-source computational tools for numerically modeling recent large-scale observational data sets using modern cosmology theory. Specifically, these tools will allow both students and researchers to…

Cosmology and Nongalactic Astrophysics · Physics 2013-05-22 Jacob Moldenhauer , Larry Engelhardt , Keenan Stone , Ezekiel Shuler

In order to account for the observable Universe, any comprehensive theory or model of cosmology must draw from many disciplines of physics, including gauge theories of strong and weak interactions, the hydrodynamics and microphysics of…

General Relativity and Quantum Cosmology · Physics 2015-06-25 Peter Anninos

In recent years there has been a lot of interest in discussing frame dependences/independences of the cosmological perturbations under the conformal transformations. This problem has previously been investigated in terms of the covariant…

General Relativity and Quantum Cosmology · Physics 2018-03-14 Yunlong Zheng , Yicen Mou , Haomin Rao , Mingzhe Li

An emerging theme across many domains of science and engineering is materials that change shape, often dramatically. Determining their structure involves solving a shape optimization problem where a given energy functional is minimized with…

Monte Carlo methods provide detailed and accurate results for radiation transport simulations. Unfortunately, the high computational cost of these methods limits its usage in real-time applications. Moreover, existing computer codes do not…

Computational Physics · Physics 2021-06-21 V. Giménez-Alventosa , V. Giménez Gómez , S. Oliver Gil

Computations have helped elucidate the dynamics of Earth's mantle for several decades already. The numerical methods that underlie these simulations have greatly evolved within this time span, and today include dynamically changing and…

Computational Engineering, Finance, and Science · Computer Science 2017-05-09 Timo Heister , Juliane Dannberg , Rene Gassmöller , Wolfgang Bangerth

These lecture notes introduce quantum spin systems and several computational methods for studying their ground-state and finite-temperature properties. Symmetry-breaking and critical phenomena are first discussed in the simpler setting of…

Strongly Correlated Electrons · Physics 2015-03-17 Anders W. Sandvik

Markov-chain Monte Carlo sampling has become a standard technique for exploring the posterior distribution of cosmological parameters constrained by observations of CMB anisotropies. Given an infinite amount of time, any MCMC sampler will…

Astrophysics · Physics 2007-05-23 Anze Slosar , Michael Hobson

We describe a new implementation of a parallel Tree-SPH code with the aim to simulate Galaxy Formation and Evolution. The code has been parallelized using SHMEM, a Cray proprietary library to handle communications between the 256 processors…

Astrophysics · Physics 2009-10-31 Cesario Lia , Giovanni Carraro

An approach to utilizing adaptive mesh refinement algorithms for storm surge modeling is proposed. Currently numerical models exist that can resolve the details of coastal regions but are often too costly to be run in an ensemble…

Numerical Analysis · Mathematics 2014-01-23 Kyle T. Mandli , Clint N. Dawson

To fully take advantage of the data provided by large-scale structure surveys, we need to quantify the potential impact of baryonic effects, such as feedback from active galactic nuclei (AGN) and star formation, on cosmological observables.…

Astronomy depends on ever increasing computing power. Processor clock-rates have plateaued, and increased performance is now appearing in the form of additional processor cores on a single chip. This poses significant challenges to the…

Instrumentation and Methods for Astrophysics · Physics 2015-05-19 Benjamin R. Barsdell , David G. Barnes , Christopher J. Fluke

Cell migration is crucial to many physiological and pathological processes. During migration, a cell adapts its morphology, including the overall morphology and nucleus morphology, in response to various cues in complex microenvironments,…

Biological Physics · Physics 2023-08-28 Yanping Liu , Yang Jiao , Qihui Fan , Xinwei Li , Zhichao Liu , Jun Hu , Jianwei Shuai , Liyu Liu , Zhangyong Li