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Phylogenies are commonly used to represent the evolutionary relationships between species, and often these phylogenies are equipped with edge lengths that indicate degrees of evolutionary difference. Given such a phylogeny, a popular…

Populations and Evolution · Quantitative Biology 2025-02-12 Martin Frohn , Kerry Manson

The system decomposition theory has recently been developed for the dynamic analysis of nonlinear compartmental systems. The application of this theory to the ecosystem analysis has also been introduced in a separate article. Based on this…

Systems and Control · Computer Science 2020-11-24 Huseyin Coskun

Context: Successfully addressing stakeholder concerns that are related to software system development and operation is crucial to achieving development goals. The importance of using a systematic approach to addressing these concerns…

Software Engineering · Computer Science 2023-02-14 Sandun Dasanayake , Jouni Markkula , Markku Oivo

Motivation: Bioinformatics is faced with a variety of problems that require human involvement. Tasks like genome annotation, image analysis, knowledge-base construction and protein structure determination all benefit from human input. In…

Quantitative Methods · Quantitative Biology 2013-07-01 Benjamin M. Good , Andrew I. Su

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

We discuss the relevance of studying ecology within the framework of Complexity Science from a statistical mechanics approach. Ecology is concerned with understanding how systems level properties emerge out of the multitude of interactions…

Populations and Evolution · Quantitative Biology 2007-09-14 Henrik Jeldtoft Jensen , Elsa Arcaute

A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Neural and Evolutionary Computing · Computer Science 2009-10-05 Gerard Briscoe , Philippe De Wilde

In abstract terms, ecosystem ecology is about determining when two ecosystems, superficially different, are alike in some deeper way. An external observer can choose any ecosystem property as being important. In contrast, two ecosystems are…

Populations and Evolution · Quantitative Biology 2017-07-12 Matthew Spencer

Several theoretical frameworks have been proposed to explain observed biodiversity patterns, ranging from the classical niche-based theories, mainly employing a continuous formalism, to neutral theories, based on statistical mechanics of…

Quantitative Methods · Quantitative Biology 2019-11-01 Xue Feng , Sara Bonetti , Amilcare Porporato

Increasingly sophisticated experiments, coupled with large-scale computational models, have the potential to systematically test biological hypotheses to drive our understanding of multicellular systems. In this short review, we explore key…

Quantitative Methods · Quantitative Biology 2019-10-28 Paul Macklin

The global production of electric goods is at an all-time high, causing negative environmental and health impacts as well as a continuing depletion of natural resources. Considering the worsening global climate change, a transition of…

Software Engineering · Computer Science 2025-11-11 Dominique Briechle , Mohammed Fahad Ali , Marit Briechle-Mathiszig , Tobias Geger , Robert Werner , Andreas Rausch

Diversity is a concept relevant to numerous domains of research varying from ecology, to information theory, and to economics, to cite a few. It is a notion that is steadily gaining attention in the information retrieval, network analysis,…

Recent advancements in Earth system science have been marked by the exponential increase in the availability of diverse, multivariate datasets characterised by moderate to high spatio-temporal resolutions. Earth System Data Cubes (ESDCs)…

Whether or not biodiversity dynamics tend toward stable equilibria remains an unsolved question in ecology and evolution with important implications for our understanding of diversity and its conservation. Phylo/population genetic models…

Populations and Evolution · Quantitative Biology 2017-05-16 A. J. Rominger , I. Overcast , H. Krehenwinkel , R. G. Gillespie , J. Harte , M. J. Hickerson

With the improvement of living standards, user requirements of modern products are becoming increasingly more diversified and personalized. Traditional product design methods can no longer satisfy the market needs due to their strong…

Human-Computer Interaction · Computer Science 2021-09-24 Huafeng Quan , Shaobo Li , Changchang Zeng , Hongjing Wei , Jianjun Hu

A primary motivation for our research in digital ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-01-31 Gerard Briscoe , Philippe De Wilde

Human population is at the centre of research on global environmental change. On the one hand, population dynamics influence the environment and the global climate system through consumption-based carbon emissions. On the other hand, health…

Other Statistics · Statistics 2021-02-02 Raya Muttarak

The international competitive market causes the increasing of shorten product life cycle and product development process with the improvement in term of time, cost and quality while increasing the waste generation. Product life cycle…

Multiagent Systems · Computer Science 2018-11-01 Thtiya Manakitsirisuthi , Yacine Ouzrout , Abdelaziz Bouras

Identifying and understanding the large-scale biodiversity patterns in time and space is vital for conservation and addressing fundamental ecological and evolutionary questions. Network-based methods have proven useful for simplifying and…

Populations and Evolution · Quantitative Biology 2023-07-03 Daniel Edler , Anton Holmgren , Alexis Rojas , Joaquín Calatayud , Martin Rosvall , Alexandre Antonelli

We are facing a real challenge when coping with the continuous acceleration of scientific production and the increasingly changing nature of science. In this article, we extend the classical framework of co-word analysis to the study of…

Physics and Society · Physics 2015-03-13 David Chavalarias , Jean-Philippe Cointet