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Clustering and visualizing high-dimensional (HD) data are important tasks in a variety of fields. For example, in bioinformatics, they are crucial for analyses of single-cell data such as mass cytometry (CyTOF) data. Some of the most…

Quantitative Methods · Quantitative Biology 2021-07-19 Joshua M. Scurll

Manifold structure learning is often used to exploit geometric information among data in semi-supervised feature learning algorithms. In this paper, we find that local discriminative information is also of importance for semi-supervised…

Machine Learning · Computer Science 2016-07-12 Sen Wang , Feiping Nie , Xiaojun Chang , Xue Li , Quan Z. Sheng , Lina Yao

Binary code similarity detection is an important problem with applications in areas such as malware analysis, vulnerability research and license violation detection. This paper proposes a novel graph neural network architecture combined…

Cryptography and Security · Computer Science 2024-11-13 Joshua Collyer , Tim Watson , Iain Phillips

Invoking the manifold assumption in machine learning requires knowledge of the manifold's geometry and dimension, and theory dictates how many samples are required. However, in applications data are limited, sampling may not be uniform, and…

Machine Learning · Computer Science 2023-03-02 Luciano Dyballa , Steven W. Zucker

Communities play a crucial role to describe and analyse modern networks. However, the size of those networks has grown tremendously with the increase of computational power and data storage. While various methods have been developed to…

Physics and Society · Physics 2013-08-30 Arnaud Browet , P. -A. Absil , Paul Van Dooren

We study the aggregate/group nearest neighbor searching for the MAX operator in the plane. For a set $P$ of $n$ points and a query set $Q$ of $m$ points, the query asks for a point of $P$ whose maximum distance to the points in $Q$ is…

Computational Geometry · Computer Science 2013-09-10 Haitao Wang

With the advancement of 3D scanning technologies, point clouds have become fundamental for representing 3D spatial data, with applications that span across various scientific and technological fields. Practical analysis of this data depends…

Computer Vision and Pattern Recognition · Computer Science 2026-02-05 Jonatan B. Bastos , Francisco F. Rivera , Oscar G. Lorenzo , David L. Vilariño , José C. Cabaleiro , Alberto M. Esmorís , Tomás F. Pena

This paper presents a novel clustering algorithm from the SPINEX (Similarity-based Predictions with Explainable Neighbors Exploration) algorithmic family. The newly proposed clustering variant leverages the concept of similarity and…

Machine Learning · Computer Science 2024-07-11 MZ Naser , Ahmed Naser

We present a new algorithm for community detection. The algorithm uses random walks to embed the graph in a space of measures, after which a modification of $k$-means in that space is applied. The algorithm is therefore fast and easily…

Machine Learning · Computer Science 2016-05-11 Mark Kozdoba , Shie Mannor

In network research, Community Detection has always been a topic of significant interest in network science, with numerous papers and algorithms proposing to uncover the underlying structures within networks. In this paper, we conduct a…

Social and Information Networks · Computer Science 2025-02-10 Yash Malode , Amit Aylani , Arvind Bhardwaj , Deepak Hajoary

A critical piece of the modern information retrieval puzzle is approximate nearest neighbor search. Its objective is to return a set of $k$ data points that are closest to a query point, with its accuracy measured by the proportion of exact…

Information Retrieval · Computer Science 2024-07-15 Thomas Vecchiato , Claudio Lucchese , Franco Maria Nardini , Sebastian Bruch

This paper presents a novel spectral algorithm with additive clustering designed to identify overlapping communities in networks. The algorithm is based on geometric properties of the spectrum of the expected adjacency matrix in a random…

Machine Learning · Statistics 2017-11-07 Emilie Kaufmann , Thomas Bonald , Marc Lelarge

We introduce a modified model of random walk, and then develop two novel clustering algorithms based on it. In the algorithms, each data point in a dataset is considered as a particle which can move at random in space according to the…

Machine Learning · Computer Science 2008-10-31 Qiang Li , Yan He , Jing-ping Jiang

A method to search for local structural similarities in proteins at atomic resolution is presented. It is demonstrated that a huge amount of structural data can be handled within a reasonable CPU time by using a conventional relational…

Biomolecules · Quantitative Biology 2007-12-28 Akira R. Kinjo , Haruki Nakamura

Distance metric learning can be viewed as one of the fundamental interests in pattern recognition and machine learning, which plays a pivotal role in the performance of many learning methods. One of the effective methods in learning such a…

Machine Learning · Computer Science 2020-02-21 Mostafa Razavi Ghods , Mohammad Hossein Moattar , Yahya Forghani

Distributed data mining techniques and mainly distributed clustering are widely used in the last decade because they deal with very large and heterogeneous datasets which cannot be gathered centrally. Current distributed clustering…

Databases · Computer Science 2018-02-02 Malika Bendechache , M-Tahar Kechadi

Delaunay Triangulation(DT) is one of the important geometric problems that is used in various branches of knowledge such as computer vision, terrain modeling, spatial clustering and networking. Kinetic data structures have become very…

Computational Geometry · Computer Science 2023-08-15 Nazanin Hadiniya , Mohammad Ghodsi

Clustering is a fundamental tool for analyzing large data sets. A rich body of work has been devoted to designing data-stream algorithms for the relevant optimization problems such as $k$-center, $k$-median, and $k$-means. Such algorithms…

Data Structures and Algorithms · Computer Science 2018-12-06 Kook Jin Ahn , Graham Cormode , Sudipto Guha , Andrew McGregor , Anthony Wirth

We propose and study a set of algorithms for discovering community structure in networks -- natural divisions of network nodes into densely connected subgroups. Our algorithms all share two definitive features: first, they involve iterative…

Statistical Mechanics · Physics 2009-11-10 M. E. J. Newman , M. Girvan

Clustering of high-dimensional data sets is a growing need in artificial intelligence, machine learning and pattern recognition. In this paper, we propose a new clustering method based on a combinatorial-topological approach applied to…

Machine Learning · Computer Science 2025-03-12 Mauricio Toledo-Acosta , Luis Ángel Ramos-García , Jorge Hermosillo-Valadez