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We investigate the evolutionary dynamics of a population structured in phenotype, subjected to trait dependent selection with a linearly moving optimum and an asexual mode of reproduction. Our model consists of a non-local and non-linear…

Analysis of PDEs · Mathematics 2021-12-09 Raphaël Forien , Jimmy Garnier , Florian Patout

We discovered a dynamic phase transition induced by sexual reproduction. The dynamics is a pure Darwinian rule with both fundamental ingredients to drive evolution: 1) random mutations and crossings which act in the sense of increasing the…

Populations and Evolution · Quantitative Biology 2009-11-13 P. M. C. de Oliveira , S. Moss de Oliveira , D. Stauffer , S. Cebrat , A. Pekalski

This work probes the role of cell geometry in orienting self-organized fluid flows in the late stage Drosophila oocyte. Recent theoretical work has shown that a model, which relies only on hydrodynamic interactions of flexible, cortically…

A mathematical model of atherosclerosis of a blood vessel is advanced with regard for the entry of low-density lipoproteins (LDLs) into blood. For the first time, the influence of cytokines on the inflammation of a blood vessel at the…

Biological Physics · Physics 2025-03-25 V. I. Grytsay

This paper addresses analytical aspects of deterministic, continuous-time dynamical systems defined on networks. The goal is to model and analyze certain phenomena which must be framed beyond the context of networked dynamical systems,…

Dynamical Systems · Mathematics 2015-01-09 Ricardo Riaza

Cells with the same genome can exist in different phenotypes. and can change between distinct phenotypes when subject to specific stimuli and microenvironments. Some examples include cell differentiation during development, reprogramming…

Quantitative Methods · Quantitative Biology 2022-09-28 Jianhua Xing

Mechanistic statistical models are commonly used to study the flow of biological processes. For example, in landscape genetics, the aim is to infer spatial mechanisms that govern gene flow in populations. Existing statistical approaches in…

Methodology · Statistics 2024-06-04 Michael R Schwob , Mevin B Hooten , Vagheesh Narasimhan

Gynandromorphs are creatures where at least two different body sections are a different sex. Bilateral gynandromorphs are half male and half female. Here we develop a theory of gynandromorph ontogeny based on developmental control networks.…

Molecular Networks · Quantitative Biology 2012-12-24 Eric Werner

Horizontal gene transfer consists in exchanging genetic materials between microorganisms during their lives. This is a major mechanism of bacterial evolution and is believed to be of main importance in antibiotics resistance. We consider a…

Probability · Mathematics 2019-12-18 Nicolas Champagnat , Sylvie Méléard , Viet Chi Tran

We consider networks of dynamical units that evolve in time according to different laws, and are coupled to each other in highly irregular ways. Studying how to steer the dynamics of such systems towards a desired evolution is of great…

Physics and Society · Physics 2020-12-01 Ricardo Gutiérrez , Massimo Materassi , Stefano Focardi , Stefano Boccaletti

We study the vortex dynamics in an evolutive flow. We carry out the statistical analysis of the resulting time series by means of the joint use of a compression and an entropy diffusion method. This approach to complexity makes it possible…

Statistical Mechanics · Physics 2009-11-10 Jacopo Bellazzini , Giulia Menconi , Guido Buresti , Paolo Grigolini , Massimiliano Ignaccolo

Our research is concerned with studying behavioural changes within a dynamic system, i.e. health care, and their effects on the decision-making process. Evolutionary Game theory is applied to investigate the most probable strategy(ies)…

Computer Science and Game Theory · Computer Science 2019-09-10 Zainab Alalawi , Yifeng Zeng , The Anh Han , Aiman Elragig

We present an operator learning approach for a class of evolution operators using a composition of a learned lift into the space of diffeomorphisms of the domain and the group action on the field space. In turn, this transforms the…

Numerical Analysis · Mathematics 2025-08-12 Seth Taylor , Alex Bihlo , Jean-Christophe Nave

Gene regulatory networks typically have low in-degrees, whereby any given gene is regulated by few of the genes in the network. They also tend to have broad distributions for the out-degree. What mechanisms might be responsible for these…

Molecular Networks · Quantitative Biology 2013-05-29 Z. Burda , A. Krzywicki , O. C. Martin , M. Zagorski

In this paper we investigate equilibria of continuous differential equation models of network dynamics. The motivation comes from gene regulatory networks where each directed edge represents either down- or up-regulation, and is modeled by…

Dynamical Systems · Mathematics 2021-07-08 William Duncan , Tomas Gedeon , Hiroshi Kokubu , Konstantin Mischaikow , Hiroe Oka

The regulatory process of Drosophila is thoroughly studied for understanding a great variety of biological principles. While pattern-forming gene networks are analysed in the transcription step, post-transcriptional events (e.g.…

Machine Learning · Statistics 2021-11-04 Andrés F. López-Lopera , Nicolas Durrande , Mauricio A. Alvarez

We extend a recently developed exact schema based, or coarse grained, formulation of genetic dynamics \cite{stewael,stewael1,stewael2} and its associated exact Schema theorem to an arbitrary selection scheme and a general crossover…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 C. R. Stephens

We build an evolutionary scenario that explains how some crucial physiological constraints in the arterial network of mammals - i.e. hematocrit, vessels diameters and arterial pressure drops - could have been selected by evolution. We…

Biological Physics · Physics 2014-05-22 Baptiste Moreau , Benjamin Mauroy

Cell dynamics simulation is used to investigate the phase behavior of block copolymer/homopolymer mixture subjected to a steady shear flow. Phase transitions occur from transverse to parallel and then to perpendicular lamellar structure…

Soft Condensed Matter · Physics 2015-06-29 Y. Guo , J. Zhang , B. Wang , H. Wu , M. Sun , J. Pan

An interface description and numerical simulations of model A kinetics are used for the first time to investigate the intra-surface kinetics of phase ordering on corrugated surfaces. Geometrical dynamical equations are derived for the…

Statistical Mechanics · Physics 2015-06-25 Oliver Schoenborn , Rashmi C. Desai
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