English
Related papers

Related papers: Characterization of Biologically Relevant Network …

200 papers

A variety of complex biological, natural and man-made systems exhibit non-Markovian dynamics that can be modeled through fractional order differential equations, yet, we lack sample comlexity aware system identification strategies. Towards…

Systems and Control · Electrical Eng. & Systems 2025-06-23 Xiaole Zhang , Vijay Gupta , Paul Bogdan

The problem of reconstructing nonlinear and complex dynamical systems from measured data or time series is central to many scientific disciplines including physical, biological, computer, and social sciences, as well as engineering and…

Data Analysis, Statistics and Probability · Physics 2017-05-01 Wenxu Wang , Ying-Cheng Lai , Celso Grebogi

Available methods for identification of stochastic dynamical systems from input-output data generally impose restricting structural assumptions on either the noise structure in the data-generating system or the possible state probability…

Systems and Control · Electrical Eng. & Systems 2024-05-02 Gerben I. Beintema , Maarten Schoukens , Roland Tóth

Digital twins (DTs), serving as the core enablers for real-time monitoring and predictive maintenance of complex cyber-physical systems, impose critical requirements on their virtual models: high predictive accuracy, strong…

Robotics · Computer Science 2026-01-16 He Ren , Gaowei Yan , Hang Liu , Lifeng Cao , Zhijun Zhao , Gang Dang

System identification, the process of deriving mathematical models of dynamical systems from observed input-output data, has undergone a paradigm shift with the advent of learning-based methods. Addressing the intricate challenges of…

Machine Learning · Computer Science 2024-12-17 Arunabh Singh , Joyjit Mukherjee

The finding that very large networks can be trained efficiently and reliably has led to a paradigm shift in computer vision from engineered solutions to learning formulations. As a result, the research challenge shifts from devising…

Computer Vision and Pattern Recognition · Computer Science 2018-03-23 Nikolaus Mayer , Eddy Ilg , Philipp Fischer , Caner Hazirbas , Daniel Cremers , Alexey Dosovitskiy , Thomas Brox

The promising outcomes of dynamical system identification techniques, such as SINDy [Brunton et al. 2016], highlight their advantages in providing qualitative interpretability and extrapolation compared to non-interpretable deep neural…

Machine Learning · Computer Science 2025-01-22 Mouad Elaarabi , Domenico Borzacchiello , Yves Le Guennec , Philippe Le Bot , Sebastien Comas-Cardona

Decision-making in complex systems often relies on machine learning models, yet highly accurate models such as XGBoost and neural networks can obscure the reasoning behind their predictions. In operations research applications,…

Machine Learning · Computer Science 2025-02-28 Gaurav Arwade , Sigurdur Olafsson

To incorporate prior knowledge as well as measurement uncertainties in the traditional long short term memory (LSTM) neural networks, an efficient sparse Bayesian training algorithm is introduced to the network architecture. The proposed…

Machine Learning · Computer Science 2021-06-25 Bram van de Weg , Lars Greve , Bojana Rosic

In many engineered systems, optimization is used for decision making at time-scales ranging from real-time operation to long-term planning. This process often involves solving similar optimization problems over and over again with slightly…

Optimization and Control · Mathematics 2019-01-18 Sidhant Misra , Line Roald , Yeesian Ng

Cellular regulatory dynamics is driven by large and intricate networks of interactions at the molecular scale, whose sheer size obfuscates understanding. In light of limited experimental data, many parameters of such dynamics are unknown,…

Quantitative Methods · Quantitative Biology 2014-04-30 Bryan C. Daniels , Ilya Nemenman

In several applications, including in synthetic biology, one often has input/output data on a system composed of many modules, and although the modules' input/output functions and signals may be unknown, knowledge of the composition…

Machine Learning · Computer Science 2026-04-28 Jichi Wang , Eduardo D. Sontag , Domitilla Del Vecchio

Chemical reaction networks (CRNs) provide a convenient language for modelling a broad variety of biological systems. These models are commonly studied with respect to the time series they generate in deterministic or stochastic simulations.…

Molecular Networks · Quantitative Biology 2019-07-11 Ozan Kahramanoğulları

One of the basic frameworks in science views behavioral products as a process within a dynamic system. The mechanism might be seen as a representation of many instances of centralized control in real time. Many real systems, however,…

Dynamical Systems · Mathematics 2019-08-19 Chulwook Park

Complex, multivariable systems are often analyzed by grouping their constituent units into components, sometimes referred to as latent features, which afford physical or biological interpretation. However, a priori many different types of…

Disordered Systems and Neural Networks · Physics 2026-05-01 Philipp Fleig , Ilya Nemenman

This technical note considers the identification of nonlinear discrete-time systems with additive process noise but without measurement noise. In particular, we propose a method and its associated algorithm to identify the system nonlinear…

Optimization and Control · Mathematics 2015-04-27 Wei Pan , Ye Yuan , Jorge Gonçalves , Guy-Bart Stan

In cognitive radio (CR) technology, the trend of sensing is no longer to only detect the presence of active primary users. A large number of applications demand for more comprehensive knowledge on primary user behaviors in spatial,…

Machine Learning · Computer Science 2015-02-10 Weijia Han , Huiyan Sang , Min Sheng , Jiandong Li , Shuguang Cui

In applications of nonlinear and complex dynamical systems, a common situation is that the system can be measured but its structure and the detailed rules of dynamical evolution are unknown. The inverse problem is to determine the system…

Dynamical Systems · Mathematics 2021-09-15 Ying-Cheng Lai

Causal models can compactly and efficiently encode the data-generating process under all interventions and hence may generalize better under changes in distribution. These models are often represented as Bayesian networks and learning them…

Machine Learning · Statistics 2020-08-24 Nan Rosemary Ke , Jane. X. Wang , Jovana Mitrovic , Martin Szummer , Danilo J. Rezende

In this paper we describe a method to identify "relevant subsets" of variables, useful to understand the organization of a dynamical system. The variables belonging to a relevant subset should have a strong integration with the other…

Molecular Networks · Quantitative Biology 2015-02-09 Marco Villani , Andrea Roli , Alessandro Filisetti , Marco Fiorucci , Irene Poli , Roberto Serra