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Medical images used in clinical practice are heterogeneous and not the same quality as scans studied in academic research. Preprocessing breaks down in extreme cases when anatomy, artifacts, or imaging parameters are unusual or protocols…

Image and Video Processing · Electrical Eng. & Systems 2022-08-31 Mostafa Mehdipour Ghazi , Mads Nielsen

Brain extraction and registration are important preprocessing steps in neuroimaging data analysis, where the goal is to extract the brain regions from MRI scans (i.e., extraction step) and align them with a target brain image (i.e.,…

Computer Vision and Pattern Recognition · Computer Science 2022-12-08 Yao Su , Zhentian Qian , Lifang He , Xiangnan Kong

Brain activity differs vastly between sleep, cognitive tasks, and action. Information theory is an appropriate concept to analytically quantify these brain states. Based on neurophysiological recordings, this concept can handle complex data…

Neurons and Cognition · Quantitative Biology 2022-05-04 Julian Fuhrer , Alejandro Blenkmann , Tor Endestad , Anne-Kristin Solbakk , Kyrre Glette

Normative modelling is an increasingly common statistical technique in neuroimaging that estimates population-level benchmarks in brain structure. It enables the quantification of individual deviations from expected distributions whilst…

Neurons and Cognition · Quantitative Biology 2025-10-21 Nida Alyas , Jonathan Horsley , Bethany Little , Peter N. Taylor , Yujiang Wang , Karoline Leiberg

Understanding neural activity and information representation is crucial for advancing knowledge of brain function and cognition. Neural activity, measured through techniques like electrophysiology and neuroimaging, reflects various aspects…

Neurons and Cognition · Quantitative Biology 2024-07-22 Fengyu Yang , Chao Feng , Daniel Wang , Tianye Wang , Ziyao Zeng , Zhiyang Xu , Hyoungseob Park , Pengliang Ji , Hanbin Zhao , Yuanning Li , Alex Wong

Two recent developments have accelerated progress in image reconstruction from human brain activity: large datasets that offer samples of brain activity in response to many thousands of natural scenes, and the open-sourcing of powerful…

Neurons and Cognition · Quantitative Biology 2023-06-02 Reese Kneeland , Jordyn Ojeda , Ghislain St-Yves , Thomas Naselaris

Brain-computer interfaces (BCIs) with speech decoding from brain recordings have broad application potential in fields such as clinical rehabilitation and cognitive neuroscience. However, current decoding methods remain limited to…

Neurons and Cognition · Quantitative Biology 2025-06-05 Yi Guo , Yihang Dong , Michael Kwok-Po Ng , Shuqiang Wang

Recent studies have shown that multi-modeling methods can provide new insights into the analysis of brain components that are not possible when each modality is acquired separately. The joint representations of different modalities is a…

Neurons and Cognition · Quantitative Biology 2022-01-24 Jalal Mirakhorli

Brain network analysis has emerged as pivotal method for gaining a deeper understanding of brain functions and disease mechanisms. Despite the existence of various network construction approaches, shortcomings persist in the learning of…

Computer Vision and Pattern Recognition · Computer Science 2023-11-10 Yongcheng Zong , Shuqiang Wang

Individual neurons often produce highly variable responses over nominally identical trials, reflecting a mixture of intrinsic "noise" and systematic changes in the animal's cognitive and behavioral state. Disentangling these sources of…

Neurons and Cognition · Quantitative Biology 2021-11-08 Alex H. Williams , Scott W. Linderman

Brain-computer interfaces have promising medical and scientific applications for aiding speech and studying the brain. In this work, we propose an information-based evaluation metric for brain-to-text decoders. Using this metric, we examine…

Computation and Language · Computer Science 2024-05-24 Richard Antonello , Nihita Sarma , Jerry Tang , Jiaru Song , Alexander Huth

The interpretability of neural networks has recently received extensive attention. Previous prototype-based explainable networks involved prototype activation in both reasoning and interpretation processes, requiring specific explainable…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Yitao Peng , Yihang Liu , Longzhen Yang , Lianghua He

Accurate compensation of brain deformation is a critical challenge for reliable image-guided neurosurgery, as surgical manipulation and tumor resection induce tissue motion that misaligns preoperative planning images with intraoperative…

Biological research has revealed that the verbal semantic information in the brain cortex, as an additional source, participates in nonverbal semantic tasks, such as visual encoding. However, previous visual encoding models did not…

Computer Vision and Pattern Recognition · Computer Science 2023-08-30 Shuxiao Ma , Linyuan Wang , Bin Yan

Recent experimental advances in neuroscience have opened new vistas into the immense complexity of neuronal networks. This proliferation of data challenges us on two parallel fronts. First, how can we form adequate theoretical frameworks…

Neurons and Cognition · Quantitative Biology 2015-06-12 Madhu Advani , Subhaneil Lahiri , Surya Ganguli

Language, as an information medium created by advanced organisms, has always been a concern of neuroscience regarding how it is represented in the brain. Decoding linguistic representations in the evoked brain has shown groundbreaking…

Computation and Language · Computer Science 2024-07-31 Yu Wang , Heyang Liu , Yuhao Wang , Chuan Xuan , Yixuan Hou , Sheng Feng , Hongcheng Liu , Yusheng Liao , Yanfeng Wang

In neural networks, task-relevant information is represented jointly by groups of neurons. However, the specific way in which this mutual information about the classification label is distributed among the individual neurons is not well…

Information Theory · Computer Science 2023-06-08 David A. Ehrlich , Andreas C. Schneider , Viola Priesemann , Michael Wibral , Abdullah Makkeh

Neural decoding is an important method in cognitive neuroscience that aims to decode brain representations from recorded neural activity using a multivariate machine learning model. The THINGS initiative provides a large EEG dataset of 46…

Machine Learning · Computer Science 2025-08-12 Laurits Dixen , Stefan Heinrich , Paolo Burelli

Brain decoding is a data analysis paradigm for neuroimaging experiments that is based on predicting the stimulus presented to the subject from the concurrent brain activity. In order to make inference at the group level, a straightforward…

Machine Learning · Statistics 2014-04-17 Emanuele Olivetti , Seyed Mostafa Kia , Paolo Avesani

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera