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Automatic segmentation of fine-grained brain structures remains a challenging task. Current segmentation methods mainly utilize 2D and 3D deep neural networks. The 2D networks take image slices as input to produce coarse segmentation in…

Computer Vision and Pattern Recognition · Computer Science 2019-05-08 Yuemeng Li , Hangfan Liu , Hongming Li , Yong Fan

Local field potential (LFP) has gained increasing interest as an alternative input signal for brain-machine interfaces (BMIs) due to its informative features, long-term stability, and low frequency content. However, despite these…

Neurons and Cognition · Quantitative Biology 2019-01-04 Nur Ahmadi , Timothy G. Constandinou , Christos-Savvas Bouganis

Decoding non-invasive brain recordings is pivotal for advancing our understanding of human cognition but faces challenges due to individual differences and complex neural signal representations. Traditional methods often require customized…

Neural and Evolutionary Computing · Computer Science 2024-10-15 Guobin Shen , Dongcheng Zhao , Xiang He , Linghao Feng , Yiting Dong , Jihang Wang , Qian Zhang , Yi Zeng

Neural encoding and decoding, which aim to characterize the relationship between stimuli and brain activities, have emerged as an important area in cognitive neuroscience. Traditional encoding models, which focus on feature extraction and…

Neurons and Cognition · Quantitative Biology 2019-08-26 Hao Wu , Ziyu Zhu , Jiayi Wang , Nanning Zheng , Badong Chen

Understanding how the brain encodes external stimuli and how these stimuli can be decoded from the measured brain activities are long-standing and challenging questions in neuroscience. In this paper, we focus on reconstructing the complex…

Neurons and Cognition · Quantitative Biology 2022-10-05 Sikun Lin , Thomas Sprague , Ambuj K Singh

As a technology to read brain states from measurable brain activities, brain decoding are widely applied in industries and medical sciences. In spite of high demands in these applications for a universal decoder that can be applied to all…

Machine Learning · Statistics 2015-02-03 Sotetsu Koyamada , Yumi Shikauchi , Ken Nakae , Masanori Koyama , Shin Ishii

In recent years, research on decoding brain activity based on functional magnetic resonance imaging (fMRI) has made remarkable achievements. However, constraint-free natural image reconstruction from brain activity is still a challenge. The…

Computer Vision and Pattern Recognition · Computer Science 2018-01-17 Chi Zhang , Kai Qiao , Linyuan Wang , Li Tong , Ying Zeng , Bin Yan

Task-specific functional MRI (fMRI) images provide excellent modalities for studying the neuronal basis of cognitive processes. We use fMRI data to formulate and solve the problem of deconvolving task-specific aggregate neuronal networks…

Neurons and Cognition · Quantitative Biology 2024-07-04 Yifan Wang , Vikram Ravindra , Ananth Grama

We analyze functional magnetic resonance imaging (fMRI) data from the Human Connectome Project (HCP) to match brain activities during a range of cognitive tasks. Our findings demonstrate that even basic linear machine learning models can…

Neurons and Cognition · Quantitative Biology 2025-10-08 Valeriya Kirova , Dzerassa Kadieva , Daniil Vlasenko , Isak B. Blank , Fedor Ratnikov

Deep learning (DL) models find increasing application in mental state decoding, where researchers seek to understand the mapping between mental states (e.g., perceiving fear or joy) and brain activity by identifying those brain regions (and…

Neurons and Cognition · Quantitative Biology 2022-10-17 Armin W. Thomas , Christopher Ré , Russell A. Poldrack

The main goal of this study is to extract a set of brain networks in multiple time-resolutions to analyze the connectivity patterns among the anatomic regions for a given cognitive task. We suggest a deep architecture which learns the…

Machine Learning · Statistics 2017-08-16 Arash Rahnama , Abdullah Alchihabi , Vijay Gupta , Panos Antsaklis , Fatos T. Yarman Vural

Decoding visual-semantic information from brain signals, such as functional MRI (fMRI), across different subjects poses significant challenges, including low signal-to-noise ratio, limited data availability, and cross-subject variability.…

Computer Vision and Pattern Recognition · Computer Science 2024-09-27 Ruizhe Zheng , Lichao Sun

Recently, visual encoding and decoding based on functional magnetic resonance imaging (fMRI) have realized many achievements with the rapid development of deep network computation. Despite the hierarchically similar representations of deep…

Neurons and Cognition · Quantitative Biology 2019-03-20 Kai Qiao , Jian Chen , Linyuan Wang , Chi Zhang , Lei Zeng , Li Tong , Bin Yan

Functional magnetic resonance imaging produces high dimensional data, with a less then ideal number of labelled samples for brain decoding tasks (predicting brain states). In this study, we propose a new deep temporal convolutional neural…

Machine Learning · Computer Science 2015-01-13 Orhan Firat , Emre Aksan , Ilke Oztekin , Fatos T. Yarman Vural

Frame stacking is broadly applied in end-to-end neural network training like connectionist temporal classification (CTC), and it leads to more accurate models and faster decoding. However, it is not well-suited to conventional neural…

Computation and Language · Computer Science 2017-05-18 Xu Tian , Jun Zhang , Zejun Ma , Yi He , Juan Wei

In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with…

Image and Video Processing · Electrical Eng. & Systems 2024-03-15 Yohann Benchetrit , Hubert Banville , Jean-Rémi King

Long short-term memory (LSTM) recurrent neural networks (RNNs) have been shown to give state-of-the-art performance on many speech recognition tasks, as they are able to provide the learned dynamically changing contextual window of all…

Computation and Language · Computer Science 2016-10-12 Xiangang Li , Xihong Wu

Deep neural network (DNN) models have demonstrated impressive performance in various domains, yet their application in cognitive neuroscience is limited due to their lack of interpretability. In this study we employ two structurally…

Signal Processing · Electrical Eng. & Systems 2024-09-04 Murat Kucukosmanoglu , Javier O. Garcia , Justin Brooks , Kanika Bansal

The integration of deep learning and neuroscience has been advancing rapidly, which has led to improvements in the analysis of brain activity and the understanding of deep learning models from a neuroscientific perspective. The…

Neurons and Cognition · Quantitative Biology 2023-06-21 Yu Takagi , Shinji Nishimoto

Resting-state functional magnetic resonance imaging (rs-fMRI) is a noninvasive technique pivotal for understanding human neural mechanisms of intricate cognitive processes. Most rs-fMRI studies compute a single static functional…

Neurons and Cognition · Quantitative Biology 2025-02-25 Bishal Thapaliya , Robyn Miller , Jiayu Chen , Yu-Ping Wang , Esra Akbas , Ram Sapkota , Bhaskar Ray , Pranav Suresh , Santosh Ghimire , Vince Calhoun , Jingyu Liu