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Related papers: Elastic Registration of Geodesic Vascular Graphs

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Graph neural networks have been a powerful tool for mesh-based physical simulation. To efficiently model large-scale systems, existing methods mainly employ hierarchical graph structures to capture multi-scale node relations. However, these…

Machine Learning · Computer Science 2025-05-22 Huayu Deng , Xiangming Zhu , Yunbo Wang , Xiaokang Yang

Most existing popular methods for learning graph embedding only consider fixed-order global structural features and lack structures hierarchical representation. To address this weakness, we propose a novel graph embedding algorithm named…

Machine Learning · Computer Science 2021-02-03 Xue Liu , Wei Wei , Xiangnan Feng , Xiaobo Cao , Dan Sun

Understanding how the spatial structure of blood vessel networks relates to their function in healthy and abnormal biological tissues could improve diagnosis and treatment for diseases such as cancer. New imaging techniques can generate…

Quantitative Methods · Quantitative Biology 2019-07-23 Helen M Byrne , Heather A Harrington , Ruth Muschel , Gesine Reinert , Bernadette J Stolz , Ulrike Tillmann

Mesh models are a promising approach for encoding the structure of 3D objects. Current mesh reconstruction systems predict uniformly distributed vertex locations of a predetermined graph through a series of graph convolutions, leading to…

Computer Vision and Pattern Recognition · Computer Science 2019-02-01 Edward J. Smith , Scott Fujimoto , Adriana Romero , David Meger

We determine the optimum topology of quasi-one dimensional nonlinear optical structures using generalized quantum graph models. Quantum graphs are relational graphs endowed with a metric and a multiparticle Hamiltonian acting on the edges,…

Quantum Physics · Physics 2015-06-19 Rick Lytel , Shoresh Shafei , Mark G. Kuzyk

Graph embeddings play a critical role in graph representation learning, allowing machine learning models to explore and interpret graph-structured data. However, existing methods often rely on opaque, high-dimensional embeddings, limiting…

Machine Learning · Computer Science 2025-11-26 Astrit Tola , Funmilola Mary Taiwo , Cuneyt Gurcan Akcora , Baris Coskunuzer

We propose the Graph Space Embedding (GSE), a technique that maps the input into a space where interactions are implicitly encoded, with little computations required. We provide theoretical results on an optimal regime for the GSE, namely a…

Machine Learning · Computer Science 2019-08-01 João Pereira , Albert Groen , Erik Stroes , Evgeni Levin

In this paper, we propose a novel graph-based data augmentation method that can generally be applied to medical waveform data with graph structures. In the process of recording medical waveform data, such as electrocardiogram (ECG) or…

Machine Learning · Computer Science 2025-02-11 Kyung Geun Kim , Byeong Tak Lee

We present CaravelMetrics, a computational framework for automated cerebrovascular analysis that models vessel morphology through skeletonization-derived graph representations. The framework integrates atlas-based regional parcellation,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Daniele Falcetta , Liane S. Canas , Lorenzo Suppa , Matteo Pentassuglia , Jon Cleary , Marc Modat , Sébastien Ourselin , Maria A. Zuluaga

We propose a novel node embedding of directed graphs to statistical manifolds, which is based on a global minimization of pairwise relative entropy and graph geodesics in a non-linear way. Each node is encoded with a probability density…

Machine Learning · Computer Science 2020-02-07 Thorben Funke , Tian Guo , Alen Lancic , Nino Antulov-Fantulin

We present a fast learning-based algorithm for deformable, pairwise 3D medical image registration. Current registration methods optimize an objective function independently for each pair of images, which can be time-consuming for large…

Computer Vision and Pattern Recognition · Computer Science 2019-03-14 Guha Balakrishnan , Amy Zhao , Mert R. Sabuncu , John Guttag , Adrian V. Dalca

In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…

Quantitative Methods · Quantitative Biology 2022-10-18 August George , Doo Nam Kim , Trevor Moser , Ian T. Gildea , James E. Evans , Margaret S. Cheung

Robust 3D mesh watermarking is a traditional research topic in computer graphics, which provides an efficient solution to the copyright protection for 3D meshes. Traditionally, researchers need manually design watermarking algorithms to…

Graphics · Computer Science 2021-09-16 Feng Wang , Hang Zhou , Han Fang , Xiaojuan Dong , Weiming Zhang , Xi Yang , Nenghai Yu

We propose an adaptive control protocol for identifying the topology of dynamical networks interconnected over undirected graphs with cooperative and antagonistic interactions. The signed network is modeled using a repelling Laplacian.…

Systems and Control · Electrical Eng. & Systems 2026-04-13 Pelin Sekercioglu , Nana Wang , Angela Fontan , Dimos V. Dimarogonas

Graphs provide a powerful framework for modeling complex systems, but their structural variability poses significant challenges for analysis and classification. To address these challenges, we introduce GAUDI (Graph Autoencoder Uncovering…

Machine Learning · Computer Science 2026-02-27 Mirja Granfors , Jesús Pineda , Blanca Zufiria Gerbolés , Joana B. Pereira , Carlo Manzo , Giovanni Volpe

Vascular networks play a crucial role in understanding brain functionalities. Brain integrity and function, neuronal activity and plasticity, which are crucial for learning, are actively modulated by their local environments, specifically…

Neurons and Cognition · Quantitative Biology 2024-02-28 Jiachen Yao , Nina Hagemann , Qiaojie Xiong , Jianxu Chen , Dirk M. Hermann , Chao Chen

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

This paper introduces a set of numerical methods for Riemannian shape analysis of 3D surfaces within the setting of invariant (elastic) second-order Sobolev metrics. More specifically, we address the computation of geodesics and geodesic…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Emmanuel Hartman , Yashil Sukurdeep , Eric Klassen , Nicolas Charon , Martin Bauer

3D point cloud registration is a fundamental problem in computer vision and robotics. There has been extensive research in this area, but existing methods meet great challenges in situations with a large proportion of outliers and time…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Kexue Fu , Shaolei Liu , Xiaoyuan Luo , Manning Wang

Learning universal graph representations across heterogeneous domains is difficult because graph datasets differ in topology, node-attribute semantics, feature dimensions, and even attribute availability. We propose GraphVec, a…

Machine Learning · Computer Science 2026-05-08 Qi Feng , Jicong Fan