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In this paper, we explore a novel model reusing task tailored for graph neural networks (GNNs), termed as "deep graph reprogramming". We strive to reprogram a pre-trained GNN, without amending raw node features nor model parameters, to…

Computer Vision and Pattern Recognition · Computer Science 2023-05-01 Yongcheng Jing , Chongbin Yuan , Li Ju , Yiding Yang , Xinchao Wang , Dacheng Tao

Due to the irregular nature of connections in most graph datasets, partitioning graph analysis algorithms across multiple computational nodes that do not share a common memory inevitably leads to large amounts of interconnect traffic.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-22 Nina Engelhardt , Hayden K. -H. So

We discuss the problem of extending data mining approaches to cases in which data points arise in the form of individual graphs. Being able to find the intrinsic low-dimensionality in ensembles of graphs can be useful in a variety of…

Social and Information Networks · Computer Science 2016-12-12 Karthikeyan Rajendran , Assimakis A. Kattis , Alexander Holiday , Risi Kondor , Ioannis G. Kevrekidis

Upcoming many core processors are expected to employ a distributed memory architecture similar to currently available supercomputers, but parallel pattern mining algorithms amenable to the architecture are not comprehensively studied. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-28 Kazuki Yoshizoe , Aika Terada , Koji Tsuda

Recurrent Neural Networks (RNNs) are among the most successful machine learning models for sequence modelling, but tend to suffer from an exponential increase in the number of parameters when dealing with large multidimensional data. To…

Machine Learning · Computer Science 2021-05-12 Yao Lei Xu , Danilo P. Mandic

A linear graph is a graph whose vertices are totally ordered. Biological and linguistic sequences with interactions among symbols are naturally represented as linear graphs. Examples include protein contact maps, RNA secondary structures…

Data Structures and Algorithms · Computer Science 2011-03-08 Yasuo Tabei , Daisuke Okanohara , Shuichi Hirose , Koji Tsuda

With the increasing use of graph-structured data, there is also increasing interest in investigating graph data dependencies and their applications, e.g., in graph data profiling. Graph Generating Dependencies (GGDs) are a class of…

Databases · Computer Science 2025-02-04 Larissa C. Shimomura , Nikolay Yakovets , George Fletcher

Recent research on pattern discovery has progressed from mining frequent patterns and sequences to mining structured patterns, such as trees and graphs. Graphs as general data structure can model complex relations among data with wide…

Databases · Computer Science 2013-12-17 Ghazi Al-Naymat

The selection of coarse-grained (CG) mapping operators is a critical step for CG molecular dynamics (MD) simulation. It is still an open question about what is optimal for this choice and there is a need for theory. The current state-of-the…

Quantitative Methods · Quantitative Biology 2022-04-05 Zhiheng Li , Geemi P. Wellawatte , Maghesree Chakraborty , Heta A. Gandhi , Chenliang Xu , Andrew D. White

Graph neural networks (GNNs) are among the most powerful tools in deep learning. They routinely solve complex problems on unstructured networks, such as node classification, graph classification, or link prediction, with high accuracy.…

Machine Learning · Computer Science 2023-08-21 Maciej Besta , Torsten Hoefler

Predictive Business Process Monitoring (PBPM) aims to forecast future events in ongoing cases based on historical event logs. While Graph Neural Networks (GNNs) are well suited to capture structural dependencies in process data, existing…

Machine Learning · Computer Science 2025-11-25 Fang Wang , Ernesto Damiani

Graph foundation models have demonstrated remarkable adaptability across diverse downstream tasks through large-scale pretraining on graphs. However, existing implementations of the backbone model, graph transformers, are typically limited…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-21 Jun-Liang Lin , Kamesh Madduri , Mahmut Taylan Kandemir

GPU-based HPC clusters are attracting more scientific application developers due to their extensive parallelism and energy efficiency. In order to achieve portability among a variety of multi/many core architectures, a popular choice for an…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-10 Ali TehraniJamsaz , Alok Mishra , Akash Dutta , Abid M. Malik , Barbara Chapman , Ali Jannesari

Graph-structured data arise in wide applications, such as computer vision, bioinformatics, and social networks. Quantifying similarities among graphs is a fundamental problem. In this paper, we develop a framework for computing graph…

Machine Learning · Statistics 2018-09-11 Zhen Zhang , Mianzhi Wang , Yijian Xiang , Yan Huang , Arye Nehorai

Self-stabilizing algorithms are an important because of their robustness and guaranteed convergence. Starting from any arbitrary state, a self-stabilizing algorithm is guaranteed to converge to a legitimate state.Those algorithms are not…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-20 Thejaka Kanewala , Marcin Zalewski , Martina Barnas , Andrew Lumsdaine

Graph Pattern based Node Matching (GPNM) is to find all the matches of the nodes in a data graph GD based on a given pattern graph GP. GPNM has become increasingly important in many applications, e.g., group finding and expert…

Databases · Computer Science 2020-02-19 Guohao Sun , Guanfeng Liu , Yan Wang , Xiaofang Zhou

Graph Neural Network (GNN) on streaming graphs has gained increasing popularity. However, its practical deployment remains challenging, as the inference process relies on Runtime Embedding Computation (RTEC) to capture recent graph changes.…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-24 Qiange Wang , Haoran Lv , Yanfeng Zhang , Weng-Fai Wong , Bingsheng He

For graph classification tasks, many traditional kernel methods focus on measuring the similarity between graphs. These methods have achieved great success on resolving graph isomorphism problems. However, in some classification problems,…

Machine Learning · Computer Science 2021-02-18 Jianming Huang , Hiroyuki Kasai

This study presents a hierarchical mining framework for high-dimensional imbalanced data, leveraging a depth graph model to address the inherent performance limitations of conventional approaches in handling complex, high-dimensional data…

Machine Learning · Computer Science 2025-02-07 Yijiashun Qi , Quanchao Lu , Shiyu Dou , Xiaoxuan Sun , Muqing Li , Yankaiqi Li

Pattern matching on large graphs is the foundation for a variety of application domains. Strict latency requirements and continuously increasing graph sizes demand the usage of highly parallel in-memory graph processing engines that need to…

Databases · Computer Science 2017-06-15 Alexander Krause , Annett Ungethüm , Thomas Kissinger , Dirk Habich , Wolfgang Lehner