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In this work we study biological neural networks from an algorithmic perspective, focusing on understanding tradeoffs between computation time and network complexity. Our goal is to abstract real neural networks in a way that, while not…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-04-30 Nancy Lynch , Cameron Musco , Merav Parter

How neurons process their inputs crucially determines the dynamics of biological and artificial neural networks. In such neural and neural-like systems, synaptic input is typically considered to be merely transmitted linearly or sublinearly…

Biological Physics · Physics 2017-06-01 David Breuer , Marc Timme , Raoul-Martin Memmesheimer

Data assimilation, in its most comprehensive form, addresses the Bayesian inverse problem of identifying plausible state trajectories that explain noisy or incomplete observations of stochastic dynamical systems. Various approaches have…

Machine Learning · Computer Science 2023-11-01 François Rozet , Gilles Louppe

Bayesian data analysis (BDA) is today used by a multitude of research disciplines. These disciplines use BDA as a way to embrace uncertainty by using multilevel models and making use of all available information at hand. In this chapter, we…

Software Engineering · Computer Science 2020-01-03 Richard Torkar , Robert Feldt , Carlo A. Furia

Functional Data Analysis (FDA) is an extension of traditional data analysis to functional data, for example spectra, temporal series, spatio-temporal images, gesture recognition data, etc. Functional data are rarely known in practice;…

Neural and Evolutionary Computing · Computer Science 2007-09-25 Fabrice Rossi , Nicolas Delannay , Brieuc Conan-Guez , Michel Verleysen

Research in machine learning for autism spectrum disorder (ASD) classification bears the promise to improve clinical diagnoses. However, recent studies in clinical imaging have shown the limited generalization of biomarkers across and…

Machine Learning · Computer Science 2022-09-23 Christian Gerloff , Kerstin Konrad , Jana Kruppa , Martin Schulte-Rüther , Vanessa Reindl

``Online" data assimilation (DA) is used to generate a new seasonal-resolution reanalysis dataset over the last millennium by combining forecasts from an ocean--atmosphere--sea-ice coupled linear inverse model with climate proxy records.…

Atmospheric and Oceanic Physics · Physics 2025-01-27 Zilu Meng , Gregory J. Hakim , Eric J. Steig

We demonstrate that two key theoretical objects used widely in Computational Neuroscience, the phase-resetting curve (PRC) from dynamics and the spike triggered average (STA) from statistical analysis, are closely related under a wide range…

Neurons and Cognition · Quantitative Biology 2007-09-26 G. Bard Ermentrout , Roberto F. Galán Nathaniel N. Urban

Semi-Supervised Domain Adaptation (SSDA) involves learning to classify unseen target data with a few labeled and lots of unlabeled target data, along with many labeled source data from a related domain. Current SSDA approaches usually aim…

Computer Vision and Pattern Recognition · Computer Science 2023-03-28 Yu-Chu Yu , Hsuan-Tien Lin

Data assimilation (DA) is widely used to combine physical knowledge and observations. It is nowadays commonly used in geosciences to perform parametric calibration. In a context of climate change, old calibrations can not necessarily be…

Machine Learning · Statistics 2021-06-23 Rem-Sophia Mouradi , Cédric Goeury , Olivier Thual , Fabrice Zaoui , Pablo Tassi

Objective: Breathing pattern variability (BPV), as a universal physiological feature, encodes rich health information. We aim to show that, a high-quality automatic sleep stage scoring based on a proper quantification of BPV extracting from…

Applications · Statistics 2023-06-06 Yu-Min Chung , Whitney K. Huang , Hau-Tieng Wu

Domain Adaptation (DA) aims to generalize the classifier learned from the source domain to the target domain. Existing DA methods usually assume that rich labels could be available in the source domain. However, there are usually a large…

Computer Vision and Pattern Recognition · Computer Science 2020-05-11 Wei Wang , Zhihui Wang , Yuankai Xiang , Jing Sun , Haojie Li , Fuming Sun , Zhengming Ding

Complex systems are fascinating because their rich macroscopic properties emerge from the interaction of many simple parts. Understanding the building principles of these emergent phenomena in nature requires assessing natural complex…

Neurons and Cognition · Quantitative Biology 2022-11-17 Anna Levina , Viola Priesemann , Johannes Zierenberg

In both neuroscience and artificial intelligence, popular functional frameworks and neural network formulations operate by making use of extrinsic error measurements and global learning algorithms. Through a set of conjectures based on…

Neurons and Cognition · Quantitative Biology 2026-02-18 Linus Mårtensson , Jonas M. D. Enander , Udaya B. Rongala , Henrik Jörntell

Biological systems use neural circuits to integrate input information and produce outputs. Synaptic convergence, where multiple neurons converge their inputs onto a single downstream neuron, is common in natural neural circuits. However,…

Mesoscale and Nanoscale Physics · Physics 2026-02-04 Wendy Otieno , Alex Gabbitas , Debi Pattnaik , Pavel Borisov , Sergey Savel'ev , Alexander G. Balanov

Topological data analyses are rapidly turning into key tools for quantifying large volumes of neurobiological data, e.g., for organizing the spiking outputs of large neuronal ensembles and thus gaining insights into the information produced…

Neurons and Cognition · Quantitative Biology 2019-09-18 Yuri Dabaghian

The asymptotic behavior of estimates and information criteria in linear models are studied in the context of hierarchically correlated sampling units. The work is motivated by biological data collected on species where autocorrelation is…

Applications · Statistics 2021-10-20 Cécile Ané

Data assimilation has become a key technique for combining physical models with observational data to estimate state variables. However, classical assimilation algorithms often struggle with the high nonlinearity present in both physical…

Machine Learning · Computer Science 2025-07-22 Zhuoyuan Li , Bin Dong , Pingwen Zhang

Neurons encode information in a binary manner and process complex signals. However, predicting or generating diverse neural activity patterns remains challenging. In vitro and in vivo studies provide distinct advantages, yet no robust…

Quantitative Methods · Quantitative Biology 2025-03-28 Masanori Shimono

Singular Value Decomposition can be considered as an effective method for Signal Processing/especially data compression. In this short paper we investigate the application of SVD to predict data equation from data. The method is similar to…

Chaotic Dynamics · Physics 2007-05-23 Prabhakar G. Vaidya , P. S. Sajini Anand
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