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Mathematical models of natural and man-made systems often have many adjustable parameters that must be estimated from multiple, potentially conflicting datasets. Rather than reporting a single best-fit parameter vector, it is often more…

Quantitative Methods · Quantitative Biology 2026-04-01 Jeffrey D. Varner

Persistent Homology (PH) allows tracking homology features like loops, holes and their higher-dimensional analogs, along with a single-parameter family of nested spaces. Currently, computing descriptors for complex data characterized by…

Computational Geometry · Computer Science 2020-10-19 Sara Scaramuccia , Federico Iuricich , Leila De Floriani , Claudia Landi

Single-parameter persistent homology, a key tool in topological data analysis, has been widely applied to data problems along with statistical techniques that quantify the significance of the results. In contrast, statistical techniques for…

Algebraic Topology · Mathematics 2020-12-14 Matthew Wright , Xiaojun Zheng

Advancements in large language models (LLMs) are showing promising impact in software development and programming assistance. However, these models struggle when operating on low-level backend code. This challenge is exacerbated in the…

Software Engineering · Computer Science 2025-12-23 Muhammad Usman Tariq , Abhinav Jangda , Angelica Moreira , Madan Musuvathi , Tyler Sorensen

Persistent homology is a popular technique in topological data analysis that tracks the lifespans of homological features in a nested sequence of spaces. This data is typically presented in a multi-set called a persistence diagram or a…

Algebraic Topology · Mathematics 2025-11-26 Deni Salja

In this paper, we introduce a novel deep learning framework, termed Purine. In Purine, a deep network is expressed as a bipartite graph (bi-graph), which is composed of interconnected operators and data tensors. With the bi-graph…

Neural and Evolutionary Computing · Computer Science 2015-04-17 Min Lin , Shuo Li , Xuan Luo , Shuicheng Yan

This paper proposes a stable volume and a stable volume variant, referred to as a stable sub-volume, for more reliable data analysis using persistent homology. In prior research, an optimal cycle and similar ideas have been proposed to…

Algebraic Topology · Mathematics 2022-01-25 Ippei Obayashi

Computation-intensive pretrained models have been taking the lead of many natural language processing benchmarks such as GLUE. However, energy efficiency in the process of model training and inference becomes a critical bottleneck. We…

Computation and Language · Computer Science 2020-02-17 Xiyou Zhou , Zhiyu Chen , Xiaoyong Jin , William Yang Wang

Features such as photon rings, jets, or hot. spots can leave particular topological signatures in a black hole image. As such, topological data analysis can be used to characterize images resulting from high resolution observations…

High Energy Astrophysical Phenomena · Physics 2022-10-11 Pierre Christian , Chi-kwan Chan , Anthony Hsu , Feryal Ozel , Dimitrios Psaltis , Iniyan Natarajan

We propose a method, based on persistent homology, to uncover topological properties of a priori unknown covariates of neuron activity. Our input data consist of spike train measurements of a set of neurons of interest, a candidate list of…

Neurons and Cognition · Quantitative Biology 2015-10-23 Gard Spreemann , Benjamin Dunn , Magnus Bakke Botnan , Nils A. Baas

Profiling tools (also known as profilers) play an important role in understanding program performance at runtime, such as hotspots, bottlenecks, and inefficiencies. While profilers have been proven to be useful, they give extra burden to…

Software Engineering · Computer Science 2025-08-06 Zhuoran Liu

Recent years have witnessed an increased interest in the application of persistent homology, a topological tool for data analysis, to machine learning problems. Persistent homology is known for its ability to numerically characterize the…

Neural and Evolutionary Computing · Computer Science 2016-08-29 Jen-Yu Liu , Shyh-Kang Jeng , Yi-Hsuan Yang

This paper presents IronEngine, a general AI assistant platform organized around a unified orchestration core that connects a desktop user interface, REST and WebSocket APIs, Python clients, local and cloud model backends, persistent…

Artificial Intelligence · Computer Science 2026-03-10 Xi Mo

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

Computational Geometry · Computer Science 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg

Machine learning model deployment for training and execution has been an important topic for industry and academic research in the last decade. Much of the attention has been focused on developing specific toolchains to support acceleration…

Programming Languages · Computer Science 2022-05-31 Hsin-I Cindy Liu , Marius Brehler , Mahesh Ravishankar , Nicolas Vasilache , Ben Vanik , Stella Laurenzo

Persistent homology analysis provides means to capture the connectivity structure of data sets in various dimensions. On the mathematical level, by defining a metric between the objects that persistence attaches to data sets, we can…

Machine Learning · Computer Science 2019-06-12 Henri Riihimäki , José Licón-Saláiz

Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

Euler-Lagrange (EL) simulations provide a direct and robust framework for modeling disperse multiphase flows. However, they are computationally expensive. While various approaches have attempted to leverage heterogeneous computing…

Computational Engineering, Finance, and Science · Computer Science 2026-03-31 Silvio Schmalfuß , Sergey Lesnik , Henrik Rusche , Dennis Niedermeier

We propose a CPU-GPU heterogeneous computing method for solving time-evolution partial differential equation problems many times with guaranteed accuracy, in short time-to-solution and low energy-to-solution. On a single-GH200 node, the…

Computational Engineering, Finance, and Science · Computer Science 2024-10-01 Tsuyoshi Ichimura , Kohei Fujita , Muneo Hori , Lalith Maddegedara , Jack Wells , Alan Gray , Ian Karlin , John Linford