Related papers: How to Fit a Tree in a Box
An upward drawing of a tree is a drawing such that no parents are below their children. It is order-preserving if the edges to children appear in prescribed order around each node. Chan showed that any tree has an upward order-preserving…
Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…
In response to a well-known open question ``Does every complete geometric graph on $2n\/$ vertices have a partition of its edge set into $n\/$ plane spanning trees?" we provide an affirmative answer when the complete geometry graph is in…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
We divide the class of infinite computable trees into three types. For the first and second types, $0'$ computes a nontrivial self-embedding while for the third type $0''$ computes a nontrivial self-embedding. These results are optimal and…
The combinatorics of RNA plays a central role in biology. Mathematical biologists have several commonly-used models for RNA: words in a fixed alphabet (representing the primary sequence of nucleotides) and plane trees (representing the…
Assume that we embed the path $P_n$ as a subgraph of a $2$-dimensional grid, namely, $P_k \times P_l$. Given such an embedding, we consider the ordered set of subpaths $L_1, L_2, \ldots , L_m$ which are maximal straight segments in the…
A long-standing conjecture on spanning trees of a hypercube states that a balanced tree on $2^n$ vertices with maximum degree at most $3$ spans the hypercube of dimension $n$ \cite{havel1986}. In this paper, we settle the conjecture for a…
We investigate isometric embeddings of finite metric trees into $(\mathbb{R}^n,d_{1})$ and $( \mathbb{R}^n, d_{\infty})$. We prove that a finite metric tree can be isometrically embedded into $(\mathbb{R}^n,d_{1})$ if and only if the number…
In the point set embeddability problem, we are given a plane graph $G$ with $n$ vertices and a point set $S$ with $n$ points. Now the goal is to answer the question whether there exists a straight-line drawing of $G$ such that each vertex…
This paper, dating from May 1991, contains preliminary (and unpublishable) notes on investigations about iteration trees. They will be of interest only to the specialist. In the first two sections I define notions of support and embeddings…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
This work presents novel algorithms for learning Bayesian network structures with bounded treewidth. Both exact and approximate methods are developed. The exact method combines mixed-integer linear programming formulations for structure…
Let $\Omega_n$ be the family of binary trees on $n$ vertices obtained by identifying the root of an rgood binary tree with a vertex of maximum eccentricity of a binary caterpillar. In the paper titled "On different middle parts of a tree…
We study the problem of decomposing (clustering) a tree with respect to costs attributed to pairs of nodes, so as to minimize the sum of costs for those pairs of nodes that are in the same component (cluster). For the general case and for…
Tabular neural network (NN) has attracted remarkable attentions and its recent advances have gradually narrowed the performance gap with respect to tree-based models on many public datasets. While the mainstreams focus on calibrating NN to…
Polytrees are a subclass of Bayesian networks that seek to capture the conditional dependencies between a set of $n$ variables as a directed forest and are motivated by their more efficient inference and improved interpretability. Since the…
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
We apply the theory of Bruhat-Tits trees to the study of optimal embeddings of two and three dimensional commutative orders into quaternion algebras. Specifically, we determine how many conjugacy classes of global Eichler orders in a…