Related papers: How to Fit a Tree in a Box
Geometric embedding of graphs in a point set in the plane is a well known problem. In this paper, the complexity of a variant of this problem, where the point set is bounded by a simple polygon, is considered. Given a point set in the plane…
Given an undirected planar graph G with n vertices and a set S of n points inside a simple polygon P, a point-set embedding of G on S is a planar drawing of G such that each vertex is mapped to a distinct point of S and the edges are…
The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…
Deciding whether a graph can be embedded in a grid using only unit-length edges is NP-complete, even when restricted to binary trees. However, it is not difficult to devise a number of graph classes for which the problem is polynomial, even…
We are interested in embedding trees T with maximum degree at most four in a rectangular grid, such that the vertices of T correspond to grid points, while edges of T correspond to non-intersecting straight segments of the grid lines. Such…
We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…
Computing a minimum-area planar straight-line drawing of a graph is known to be NP-hard for planar graphs, even when restricted to outerplanar graphs. However, the complexity question is open for trees. Only a few hardness results are known…
We study the problem of Upward Point-Set Embeddability, that is the problem of deciding whether a given upward planar digraph $D$ has an upward planar embedding into a point set $S$. We show that any switch tree admits an upward planar…
One of the important features of an interconnection network is its ability to efficiently simulate programs or parallel algorithms written for other architectures. Such a simulation problem can be mathematically formulated as a graph…
We make progress on a number of open problems concerning the area requirement for drawing trees on a grid. We prove that 1. every tree of size $n$ (with arbitrarily large degree) has a straight-line drawing with area $n2^{O(\sqrt{\log\log…
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic…
Phylogenetic (evolutionary) trees and networks are leaf-labeled graphs that are widely used to represent the evolutionary relationships between entities such as species, languages, cancer cells, and viruses. To reconstruct and analyze…
We study upward planar straight-line embeddings (UPSE) of directed trees on given point sets. The given point set $S$ has size at least the number of vertices in the tree. For the special case where the tree is a path $P$ we show that: (a)…
Tree containment problem is a fundamental problem in phylogenetic study, as it is used to verify a network model. It asks whether a given network contain a subtree that resembles a binary tree. The problem is NP-complete in general, even in…
Full binary trees naturally represent commutative non-associative products. There are many important examples of these products: finite-precision floating-point addition and NAND gates, among others. Balance in such a tree is highly…
We study the design of efficient algorithms for combinatorial pattern matching. More concretely, we study algorithms for tree matching, string matching, and string matching in compressed texts.
In this paper, we present a polynomial dynamic programming algorithm that tests whether a $n$-vertex directed tree $T$ has an upward planar embedding into a convex point-set $S$ of size $n$. Further, we extend our approach to the class of…
We prove that for any finite tree $T$ with $n$ vertices and maximal degree $3$, there is a topological embedding of $T$ into the integer grid $Z^2$ which maps vertices to vertices and whose image meets at most $\frac{7}{3}n$ vertices. This…
We prove a fix point theorem for monoids of self-embeddings of trees. As a corollary, we obtain a result by Laflamme, Pouzet and Sauer that a tree either contains a subdivided binary tree as a subtree or has a vertex, and edge, an end or…
Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…