Related papers: Asymptotically Optimal Codes Correcting Fixed-Leng…
A tandem duplication denotes the process of inserting a copy of a segment of DNA adjacent to its original position. More formally, a tandem duplication can be thought of as an operation that converts a string $S = AXB$ into a string $T =…
This paper considers the problem of channel coding with a given (possibly suboptimal) maximum-metric decoding rule. A cost-constrained random-coding ensemble with multiple auxiliary costs is introduced, and is shown to achieve error…
This work studies problems in data reconstruction, an important area with numerous applications. In particular, we examine the reconstruction of binary and non-binary sequences from synchronization (insertion/deletion-correcting) codes.…
We study the duplication with transposition distance between strings of length $n$ over a $q$-ary alphabet and their roots. In other words, we investigate the number of duplication operations of the form $x = (abcd) \to y = (abcbd)$, where…
Levenshtein introduced the problem of constructing $k$-deletion correcting codes in 1966, proved that the optimal redundancy of those codes is $O(k\log N)$, and proposed an optimal redundancy single-deletion correcting code (using the…
Insertion-deletion codes (insdel codes for short) are used for correcting synchronization errors in communications, and in other many interesting fields such as DNA storage, date analysis, race-track memory error correction and language…
This paper is concerned with the problem of error-free communication over the i.i.d. duplication channel which acts on a transmitted sequence $ x_1 \cdots x_n $ by inserting a random number of copies of each symbol $ x_i $ next to the…
As DNA data storage moves closer to practical deployment, minimizing sequencing coverage depth is essential to reduce both operational costs and retrieval latency. This paper addresses the recently studied Random Access Problem, which…
In this paper, we prove that with high probability, random Reed-Solomon codes approach the half-Singleton bound - the optimal rate versus error tradeoff for linear insdel codes - with linear-sized alphabets. More precisely, we prove that,…
We study error-correcting codes in the space $\mathcal{S}_{n,q}$ of length-$n$ multisets over a $q$-ary alphabet, motivated by permutation channels in which ordering is completely lost and errors act solely by deletions of symbols, i.e., by…
Motivated by communication channels in which the transmitted sequences are subject to random permutations, as well as by certain DNA storage systems, we study the error control problem in settings where the information is stored/transmitted…
The problem of designing codes for deletion-correction and synchronization has received renewed interest due to applications in DNA-based data storage systems that use nanopore sequencers as readout platforms. In almost all instances,…
Error-correcting codes resilient to synchronization errors such as insertions and deletions are known as insdel codes. Due to their important applications in DNA storage and computational biology, insdel codes have recently become a focal…
We say that a $q$-ary length $n$ code is \emph{non-overlapping} if the set of non-trivial prefixes of codewords and the set of non-trivial suffices of codewords are disjoint. These codes were first studied by Levenshtein in 1964, motivated…
We settle the problem of determining the asymptotic behavior of the parameters of optimal difference systems of sets, or DSSes for short, which were originally introduced for computationally efficient frame synchronization under the…
We prove that every $1$-error-correcting code over a finite field can be embedded in a $1$-perfect code of some larger length. Embedding in this context means that the original code is a subcode of the resulting $1$-perfect code and can be…
Recent advances in noiseless non-adaptive group testing have led to a precise asymptotic characterization of the number of tests required for high-probability recovery in the sublinear regime $k = n^{\theta}$ (with $\theta \in (0,1)$), with…
An orientable sequence of order $n$ over an alphabet $\{0,1,\ldots, k{-}1\}$ is a cyclic sequence such that each length-$n$ substring appears at most once \emph{in either direction}. When $k= 2$, efficient algorithms are known to construct…
Recently, DNA storage has surfaced as a promising alternative for data storage, presenting notable benefits in terms of storage capacity, cost-effectiveness in maintenance, and the capability for parallel replication. Mathematically, the…
Locally repairable codes have become a key instrument in large-scale distributed storage systems. This paper focuses on the construction of locally repairable codes with $(r,\delta)$-locality that achieve the equality in the Singleton-type…