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Nearest-neighbor coupled-mode theory is a powerful framework to describe electromagnetic-wave propagation in multicore fibers but it lacks precision as the separation between cores decreases. We use abstract symmetries to study a ring of…

The conductance of systems containing two tunnel point-contacts and a single subsurface scatterer is investigated theoretically. The problem is solved in the approximation of s-wave scattering giving analytical expressions for the wave…

Mesoscale and Nanoscale Physics · Physics 2015-05-20 N. V. Khotkevych , Yu. A. Kolesnichenko , J. M. van Ruitenbeek

Collective cell migration is a multicellular phenomenon that arises in various biological contexts, including cancer and embryo development. "Collectiveness" can be promoted by cell-cell interactions such as co-attraction and contact…

Cell Behavior · Quantitative Biology 2023-10-03 Viktoria Freingruber , Kevin J. Painter , Mariya Ptashnyk , Linus Schumacher

The migration of cells is relevant for processes such as morphogenesis, wound healing, and invasion of cancer cells. In order to move, single cells deform cyclically. However, it is not understood how these shape oscillations influence…

Biological Physics · Physics 2019-09-04 Matteo Campo , Simon K. Schnyder , John J. Molina , Thomas Speck , Ryoichi Yamamoto

Motivation: One of the branches of Systems Biology is focused on a deep understanding of underlying regulatory networks through the analysis of the biomolecules oscillations and their interplay. Synthetic Biology exploits gene or/and…

Molecular Networks · Quantitative Biology 2020-11-30 Francesco Bardozzo , Pietro Liò , Roberto Tagliaferri

Subwavelength ring-shaped structures of quantum emitters exhibit outstanding radiation properties and are useful for antennas, excitation transport, and storage. Taking inspiration from the oligomeric geometry of biological light-harvesting…

We study theoretically the transmission through a quantum dot molecule embedded in the arms of an Aharonov-Bohm four quantum dot ring threaded by a magnetic flux. The tunable molecular coupling provides a transmission pathway between the…

Mesoscale and Nanoscale Physics · Physics 2013-05-28 Daniel A. Lovey , Sergio S. Gomez , Rodolfo H. Romero

In vivo, eukaryotic cells are embedded in a matrix environment, where they grow and develop. Generally, this extracellular matrix (ECM) is an anisotropic fibrous structure, through which macromolecules and biochemical signaling molecules at…

Biological Physics · Physics 2020-01-06 David Gomez , Sari Natan , Yair Shokef , Ayelet Lesman

The electromagnetic scattering from interconnections of high-permittivity dielectric thin wires with sizes smaller than (or almost equal to) the operating wavelength is investigated. A simple lumped element model for the polarization…

Classical Physics · Physics 2021-07-14 Carlo Forestiere , Giovanni Miano , Bruno Miranda

A variety of open quantum networks are currently under intense examination to model energy transport in photosynthetic systems. Here we study the coherent transfer of a quantum excitation over a network incoherently coupled with a…

Quantum Physics · Physics 2015-03-18 Lorenzo Campos Venuti , Paolo Zanardi

Co-channel interference poses a challenge in any wireless communication network where the time-frequency resources are reused over different geographical areas. The interference is particularly diverse in cell-free massive multiple-input…

Signal Processing · Electrical Eng. & Systems 2024-04-19 Mahmoud Zaher , Emil Björnson , Marina Petrova

Inferring the directionality of interactions between cellular processes is a major challenge in systems biology. Time-lagged correlations allow to discriminate between alternative models, but they still rely on assumed underlying…

Quantitative Methods · Quantitative Biology 2017-11-15 Sourabh Lahiri , Philippe Nghe , Sander J. Tans , Martin Luc Rosinberg , David Lacoste

Understanding inter-site mutual mode interaction in coupled physical systems is essential to comprehend large compound systems as this local interaction determines the successive multiple inter-site energy transfer efficiency. We…

We study the transferring of useful energy (work) along a transmission line that allows for partial preservation of quantum coherence. As a figure of merit we adopt the maximum values that ergotropy, total ergotropy, and non-equilibrium…

Quantum Physics · Physics 2021-11-30 Salvatore Tirone , Raffaele Salvia , Vittorio Giovannetti

Recent ultrafast optical experiments show that excitons in large biological light-harvesting complexes are coupled to molecular vibration modes. These high-frequency vibrations will not only affect the optical response, but also drive the…

Quantum Physics · Physics 2015-02-12 Arend G. Dijkstra , Chen Wang , Jianshu Cao , Graham R. Fleming

Invertible cellular automata are useful as models of physical systems with microscopically revesible dyanmics. There are several well-understood ways to construct them: partitioning rules, second-order rules, and alternating-grid rules. We…

Cellular Automata and Lattice Gases · Physics 2015-09-30 Benjamin Schumacher , Michael D. Westmoreland

It is shown that quantum interference can be employed to create an exciton transistor. An applied potential gates the quasi-particle motion and also discriminates between quasi-particles of differing binding energy. When implemented within…

Mesoscale and Nanoscale Physics · Physics 2015-12-23 Mark T. Lusk , Charles Stafford , Jeramy D. Zimmerman , Lincoln D. Carr

Non-Markovian and non-equilibrium phonon effects are believed to be key ingredients in the energy transfer in photosynthetic complexes, especially in complexes which exhibit a regime of intermediate exciton-phonon coupling. In this work, we…

Quantum Physics · Physics 2011-07-08 Patrick Rebentrost , Alán Aspuru-Guzik

We report numerical simulations of a strongly biased diffusion process on a one-dimensional substrate with directed shortcuts between randomly chosen sites, i.e. with a small-world-like structure. We find that, unlike many other dynamical…

Statistical Mechanics · Physics 2009-11-07 Damian H. Zanette

Information theory provides powerful tools for understanding communication systems. This analysis can be applied to intercellular signal transduction, which is a means of chemical communication among cells and microbes. We discuss how to…

Quantitative Methods · Quantitative Biology 2016-11-15 Andrew W. Eckford , Kenneth A. Loparo , Peter J. Thomas