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Two distinct approaches, the Frenkel-Dirac time-dependent variation and the Haken-Strobl model, are adopted to study energy transfer dynamics in single-ring and double-ring light-harvesting systems in purple bacteria. It is found that…

Chemical Physics · Physics 2015-06-05 Jun Ye , Kewei Sun , Yang Zhao , Yunjin Yu , Chee Kong Lee , Jianshu Cao

Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological…

Cell Behavior · Quantitative Biology 2019-11-04 Gabriele Micali , Robert G. Endres

Experimental evidence shows that a variety of photosynthetic systems can preserve quantum beats in the process of electronic energy transfer, even at room temperature. However, whether this quantum coherence arises in vivo and whether it…

Quantum Physics · Physics 2012-10-22 Stephan Hoyer , Akihito Ishizaki , K. Birgitta Whaley

We show that when cells communicate by contact-mediated interactions, heterogeneity in cell shapes and sizes leads to qualitatively distinct collective behavior in the tissue. For inter-cellular coupling that implements lateral inhibition,…

Tissues and Organs · Quantitative Biology 2023-01-10 Chandrashekar Kuyyamudi , Shakti N. Menon , Sitabhra Sinha

We present a novel, counter-intuitive method, based on dark state protection, for significantly improving exciton transport efficiency through `wires' comprising a chain of molecular sites with an intrinsic energy gradient. Specifically, by…

Quantum Physics · Physics 2020-10-07 Scott Davidson , Amir Fruchtman , Felix Pollock , Erik Gauger

We recently proposed effective normal modes for excitonically coupled aggregates which exactly transform the energy transfer Hamiltonian into a sum of one-dimensional Hamiltonians along the effective normal modes. Identifying physically…

Chemical Physics · Physics 2022-05-25 Sanjoy Patra , Vivek Tiwari

We theoretically analyze the excitation energy transfer between two closely spaced linear molecular J-aggregates, whose excited states are Frenkel excitons. The aggregate with the higher (lower) exciton band edge energy is considered as the…

Disordered Systems and Neural Networks · Physics 2007-05-23 C. Didraga , V. A. Malyshev , J. Knoester

Non-radiative optical energy transfer from a GaAs quantum well to a thin overlayer of an infrared organic semiconductor dye is unambiguously demonstrated. The dynamics of exciton transfer are studied in the time-domain using pump-probe…

Other Condensed Matter · Physics 2009-11-13 S. Chanyawadee , P. G. Lagoudakis , R. T. Harley , D. G. Lidzey , M. Henini

Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

Quantitative Methods · Quantitative Biology 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

We consider a continuum mechanical model for the migration of multiple cell populations through parts of tissue separated by thin membranes. In this model, cells belonging to different populations may be characterised by different…

Analysis of PDEs · Mathematics 2021-09-28 Chiara Giverso , Tommaso Lorenzi , Luigi Preziosi

Quantum interference between one- and two-photon absorption pathways allows coherent control of interband transitions in unbiased bulk semiconductors; carrier population, carrier spin polarization, photocurrent injection, and spin current…

Other Condensed Matter · Physics 2007-05-23 R. D. R. Bhat , J. E. Sipe

We theoretically investigate exciton relaxation dynamics in molecular aggregates based on model photosynthetic complexes under various conditions of incoherent excitation. We show that noise-induced quantum coherence is generated between…

Biological Physics · Physics 2014-08-14 Dmitri V. Voronine , Konstantin E. Dorfman , Bin Cao , Amitabh Joshi

With rotating-wave approximation (RWA), we show in this paper that exciton transmission in a one-dimensional two-level molecule chain embedded in a cavity can be enhanced or suppressed by strong cavity-chain couplings. This exciton…

Quantum Physics · Physics 2017-10-18 Y. Q. Ji , M. Qin , X. Q. Shao , X. X. Yi

In this paper a lattice model for diffusional transport of particles in the interphase cell nucleus is proposed. Dense networks of chromatin fibers are created by three different methods: randomly distributed, non-interconnected obstacles,…

Biological Physics · Physics 2009-11-13 Annika Wedemeier , Holger Merlitz , Chen-Xu Wu , Jörg Langowski

Mutual information is a theoretically grounded metric for quantifying cellular signaling pathways. However, its measurement demands characterization of both input and output distributions, limiting practical applications. Here, we present…

Quantitative Methods · Quantitative Biology 2025-07-08 Kento Nakamura , Hajime Fukuoka , Akihiko Ishijima , Tetsuya J. Kobayashi

We address two-level systems arranged in ring configurations affected by static disorder. In particular we investigate the role of dephasing in the transport of an excitation along the ring. We compare the efficiency of the transfer process…

Quantum Physics · Physics 2018-01-09 Dario Tamascelli , Alessia Segati , Stefano Olivares

The effect of nonlinear transmission in coupled optical waveguide arrays is theoretically investigated via numerical simulations on the corresponding model equations. The realistic experimental setup is suggested injecting the beam in a…

Condensed Matter · Physics 2009-11-10 Ramaz Khomeriki

The interplay between exctions and vibrations is considered to be a key factor in determining the exciton transfer properties in light-harvesting exciton transfer complexes. Here we study this interplay theoretically in a model for exciton…

Mesoscale and Nanoscale Physics · Physics 2018-05-25 Omer Goldberg , Yigal Meir , Yonatan Dubi

Organic solar cells are a promising avenue for renewable energy, and our study introduces a comprehensive model to investigate exciton dissociation processes at the donor-acceptor interface. Examining quantum efficiency and emitted phonons…

Materials Science · Physics 2025-02-05 Jouda Jemaa Khabthani , Khouloud Chika , Alexandre Perrin , Didier Mayou

We demonstrate theoretically the possibility of optimal control of light propagation and exciton transfer in arrays constructed of subnanometer sized noble-metal clusters by using phase-shaped laser pulses and analyze the mechanism…

Atomic and Molecular Clusters · Physics 2018-03-19 Polina G. Lisinetskaya , Roland Mitric
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