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Genomic selection has increased genetic gain in several livestock species, but due to the complicated genetics and reproduction biology not yet in honey bees. Recently, 2 970 queens were genotyped to gather a reference population. For the…

Genomics · Quantitative Biology 2022-06-16 Richard Bernstein , Manuel Du , Zhipei G. Du , Anja S. Strauss , Andreas Hoppe , Kaspar Bienefeld

It is extremely important to correctly identify the cultivars of maize seeds in the breeding process of maize. In this paper, the transfer learning as a method of deep learning is adopted to establish a model by combining with the…

Computer Vision and Pattern Recognition · Computer Science 2018-05-31 Wen-Xuan Liao , Xuan-Yu Wang , Dong An , Yao-Guang Wei

In DNA computing, it is impossible to decide whether a specific hybridization among complex DNA molecules is effective or not within acceptable time. In order to address this common problem, we introduce a new method based on the machine…

Quantitative Methods · Quantitative Biology 2018-07-03 Weijun Zhu

To operate process engineering systems in a safe and reliable manner, predictive models are often used in decision making. In many cases, these are mechanistic first principles models which aim to accurately describe the process. In…

Machine Learning · Computer Science 2022-05-20 Timur Bikmukhametov , Johannes Jäschke

Node classification is the task of inferring or predicting missing node attributes from information available for other nodes in a network. This paper presents a general prediction model to hierarchical multi-label classification (HMC),…

Machine Learning · Computer Science 2022-03-24 Miguel Romero , Jorge Finke , Camilo Rocha

Breeding for new crop characteristics and adjusting management practices are critical avenues to mitigate yield loss and maintain yield stability under a changing climate. However, identifying high-performing plant traits and management…

Populations and Evolution · Quantitative Biology 2022-06-09 Jennifer Hsiao , Soo-Hyung Kim , Dennis J. Timlin , Nathaniel D. Mueller , Abigail L. S. Swann

With fairness concerns gaining significant attention in Machine Learning (ML), several bias mitigation techniques have been proposed, often compared against each other to find the best method. These benchmarking efforts tend to use a common…

Machine Learning · Computer Science 2024-11-20 Prakhar Ganesh , Usman Gohar , Lu Cheng , Golnoosh Farnadi

A crop can be represented as a biotechnical system in which components are either chosen (cultivar, management) or given (soil, climate) and whose combination generates highly variable stress patterns and yield responses. Here, we used…

Populations and Evolution · Quantitative Biology 2014-03-13 Pierre Casadebaig , Ronan Trépos , Victor Picheny , Nicolas B. Langlade , Patrick Vincourt , Philippe Debaeke

This study explores the application of machine learning-based genetic linguistics for identifying heavy metal response genes in rice (Oryza sativa). By integrating convolutional neural networks and random forest algorithms, we developed a…

Machine Learning · Computer Science 2025-03-24 Ruiqi Yang , Jianxu Wang , Wei Yuan , Xun Wang , Mei Li

Machine learning models have recently emerged to predict whether hypothetical solid-state materials can be synthesized. These models aim to circumvent direct first-principles modeling of solid-state phase transformations, instead learning…

Materials Science · Physics 2026-02-05 Jane Schlesinger , Simon Hjaltason , Nathan J. Szymanski , Christopher J. Bartel

This study addresses the vital role of data analytics in monitoring fertiliser applications in crop cultivation. Inaccurate fertiliser application decisions can lead to costly consequences, hinder food production, and cause environmental…

Machine Learning · Computer Science 2023-10-19 Usama Ikhlaq , Tahar Kechadi

To understand and predict the performance of scientific applications, several analytical and machine learning approaches have been proposed, each having its advantages and disadvantages. In this paper, we propose and validate a hybrid…

Performance · Computer Science 2019-02-27 Huda Ibeid , Siping Meng , Oliver Dobon , Luke Olson , William Gropp

Data heterogeneity plays a pivotal role in determining the performance of machine learning (ML) systems. Traditional algorithms, which are typically designed to optimize average performance, often overlook the intrinsic diversity within…

Machine Learning · Computer Science 2025-06-03 Jiashuo Liu , Peng Cui

Models for genome-wide prediction and association studies usually target a single phenotypic trait. However, in animal and plant genetics it is common to record information on multiple phenotypes for each individual that will be genotyped.…

Methodology · Statistics 2014-12-09 Marco Scutari , Phil Howell , David J. Balding , Ian Mackay

Manifold learning now plays a very important role in machine learning and many relevant applications. Although its superior performance in dealing with nonlinear data distribution, data sparsity is always a thorny knot. There are few…

Machine Learning · Computer Science 2019-09-17 Shenglan Liu , Yang Yu , Yang Liu , Hong Qiao , Lin Feng , Jiashi Feng

A key element of any machine learning algorithm is the use of a function that measures the dis/similarity between data points. Given a task, such a function can be optimized with a metric learning algorithm. Although this research field has…

Machine Learning · Statistics 2019-09-05 Léo Gautheron , Emilie Morvant , Amaury Habrard , Marc Sebban

Data and knowledge representation are fundamental concepts in machine learning. The quality of the representation impacts the performance of the learning model directly. Feature learning transforms or enhances raw data to structures that…

Artificial Intelligence · Computer Science 2021-04-26 Filipe Alves Neto Verri , Renato Tinós , Liang Zhao

The performance of many machine learning models depends on their hyper-parameter settings. Bayesian Optimization has become a successful tool for hyper-parameter optimization of machine learning algorithms, which aims to identify optimal…

Machine Learning · Computer Science 2020-08-04 Lidan Wang , Franck Dernoncourt , Trung Bui

Reinforcement learning algorithms can show strong variation in performance between training runs with different random seeds. In this paper we explore how this affects hyperparameter optimization when the goal is to find hyperparameter…

Machine Learning · Computer Science 2020-07-31 Lars Hertel , Pierre Baldi , Daniel L. Gillen

One of the most critical issues in machine learning is the selection of appropriate hyper parameters for training models. Machine learning models may be able to reach the best training performance and may increase the ability to generalize…

Machine Learning · Computer Science 2023-02-23 Caner Erden , Halil Ibrahim Demir , Abdullah Hulusi Kökçam