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We give a proof for sharp estimate for the number of spanning trees using linear algebra and generalize this bound to multigraphs. In addition, we show that this bound is tight for complete graphs. In addition, we give estimates for number…
The topological framework of circuit topology has recently been introduced to complement knot theory and to help in understanding the physics of molecular folding. Naturally evolved linear molecular chains, such as proteins and nucleic…
The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…
In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…
Invariant theory is concerned with functions that do not change under the action of a given group. Here we communicate an approach based on tensor networks to represent polynomial local unitary invariants of quantum states. This graphical…
The ring of graph invariants is spanned by the basic graph invariants which calculate the number of subgraphs isomorphic to a given graph in other graphs. These subgraphs counting invariants are not algebraically independent. In our view…
Let $R$ and $B$ be two disjoint sets of points in the plane where the points of $R$ are colored red and the points of $B$ are colored blue, and let $n=|R\cup B|$. A bichromatic spanning tree is a spanning tree in the complete bipartite…
A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…
Tutte's dichromate T(x,y) is a well known graph invariant. Using the original definition in terms of internal and external activities as our point of departure, we generalize the valuations T(x,1) and T(1,y) to hypergraphs. In the…
The main purpose of this paper is to develop new algorithms for computing invariant rings in a general setting. This includes invariants of nonreductive groups but also of groups acting on algebras over certain rings. In particular, we…
A graph is odd if all of its vertices have odd degrees. In particular, an odd spanning tree in a connected graph is a spanning tree in which all vertices have odd degrees. In this paper we establish a unified technique to enumerate odd…
Phylogenetic invariants are certain polynomials in the joint probability distribution of a Markov model on a phylogenetic tree. Such polynomials are of theoretical interest in the field of algebraic statistics and they are also of practical…
The classical matrix-tree theorem relates the determinant of the combinatorial Laplacian on a graph to the number of spanning trees. We generalize this result to Laplacians on one- and two-dimensional vector bundles, giving a combinatorial…
Cayley's formula states that there are $n^{n-2}$ spanning trees in the complete graph on $n$ vertices; it has been proved in more than a dozen different ways over its 150 year history. The complete graphs are a special case of threshold…
We classify connected spanning convex subgraphs of the square cycles. We then show that every spanning tree of $C_n^2$ is contained in a unique nontrivial connected spanning convex subgraph of $C_n^2$. As a result, we obtain a purely…
We define the intersection complex for the universal cover of a compact weakly special square complex and show that it is a quasi-isometry invariant. By using this quasi-isometry invariant, we study the quasi-isometric classification of…
We define a range of new coarse geometric invariants based on various graph-theoretic measures of complexity for finite graphs, including: treewidth, pathwidth, cutwidth and bandwidth. We prove that, for bounded degree graphs, these…
We describe some regular techniques of calculating finite degree invariants of triple points free smooth plane curves $S^1 \to R^2$. They are a direct analog of similar techniques for knot invariants and are based on the calculus of {\em…
Arborescent knots are the ones which can be represented in terms of double fat graphs or equivalently as tree Feynman diagrams. This is the class of knots for which the present knowledge is enough for lifting topological description to the…
We construct combinatorial Hubbard trees for all unicritical polynomials, and for all exponential maps, for which the critical (singular) value does not escape. More precisely, out of an external angle, or more generally a kneading…