English
Related papers

Related papers: From POS tagging to dependency parsing for biomedi…

200 papers

The central bottleneck for low-resource NLP is typically regarded to be the quantity of accessible data, overlooking the contribution of data quality. This is particularly seen in the development and evaluation of low-resource systems via…

Computation and Language · Computer Science 2022-11-15 Maartje ter Hoeve , David Grangier , Natalie Schluter

State-of-the-art models for joint entity recognition and relation extraction strongly rely on external natural language processing (NLP) tools such as POS (part-of-speech) taggers and dependency parsers. Thus, the performance of such joint…

Computation and Language · Computer Science 2018-12-18 Giannis Bekoulis , Johannes Deleu , Thomas Demeester , Chris Develder

This paper addresses the problem of improving POS tagging of transcripts of speech from clinical populations. In contrast to prior work on parsing and POS tagging of transcribed speech, we do not make use of an in domain treebank for…

Computation and Language · Computer Science 2023-07-13 Seth Kulick , Neville Ryant , David J. Irwin , Naomi Nevler , Sunghye Cho

Neural network-based representations ("embeddings") have dramatically advanced natural language processing (NLP) tasks, including clinical NLP tasks such as concept extraction. Recently, however, more advanced embedding methods and…

Computation and Language · Computer Science 2019-08-15 Yuqi Si , Jingqi Wang , Hua Xu , Kirk Roberts

Named entity recognition (NER), which focuses on the extraction of semantically meaningful named entities and their semantic classes from text, serves as an indispensable component for several down-stream natural language processing (NLP)…

Computation and Language · Computer Science 2018-10-23 Zhanming Jie , Aldrian Obaja Muis , Wei Lu

Causality detection draws plenty of attention in the field of Natural Language Processing and linguistics research. It has essential applications in information retrieval, event prediction, question answering, financial analysis, and market…

Computation and Language · Computer Science 2021-11-02 Gunjan Haldar , Aman Mittal , Pradyumna Gupta

Health Mention Classification (HMC) plays a critical role in leveraging social media posts for real-time tracking and public health monitoring. Nevertheless, the process of HMC presents significant challenges due to its intricate nature,…

Computation and Language · Computer Science 2025-05-01 Reem Abdel-Salam , Mary Adewunmi

Dependency context-based word embedding jointly learns the representations of word and dependency context, and has been proved effective in aspect term extraction. In this paper, we design the positional dependency-based word embedding…

Computation and Language · Computer Science 2020-12-21 Yichun Yin , Chenguang Wang , Ming Zhang

We present a dependency parser implemented as a single deep neural network that reads orthographic representations of words and directly generates dependencies and their labels. Unlike typical approaches to parsing, the model doesn't…

Computation and Language · Computer Science 2017-06-07 Jan Chorowski , Michał Zapotoczny , Paweł Rychlikowski

We introduce a linguistically enhanced combination of pre-training methods for transformers. The pre-training objectives include POS-tagging, synset prediction based on semantic knowledge graphs, and parent prediction based on dependency…

Computation and Language · Computer Science 2023-01-02 Maren Pielka , Svetlana Schmidt , Lisa Pucknat , Rafet Sifa

We describe our work on information extraction in medical documents written in German, especially detecting negations using an architecture based on the UIMA pipeline. Based on our previous work on software modules to cover medical concepts…

Computation and Language · Computer Science 2021-05-21 Hans-Jürgen Profitlich , Daniel Sonntag

Medical relation extraction discovers relations between entity mentions in text, such as research articles. For this task, dependency syntax has been recognized as a crucial source of features. Yet in the medical domain, 1-best parse trees…

Computation and Language · Computer Science 2019-12-17 Linfeng Song , Yue Zhang , Daniel Gildea , Mo Yu , Zhiguo Wang , Jinsong Su

This study presents the development of a part-of-speech (POS) tagging model to extract the skeletal structure of sentences using transfer learning with the BERT architecture for token classification. The model, fine-tuned on Russian text,…

Computation and Language · Computer Science 2025-05-20 Grigorii Churakov

Event extraction (EE), which acquires structural event knowledge from texts, can be divided into two sub-tasks: event type classification and element extraction (namely identifying triggers and arguments under different role patterns). As…

Computation and Language · Computer Science 2022-08-19 Qian Li , Shu Guo , Jia Wu , Jianxin Li , Jiawei Sheng , Lihong Wang , Xiaohan Dong , Hao Peng

PoS tags, once taken for granted as a useful resource for syntactic parsing, have become more situational with the popularization of deep learning. Recent work on the impact of PoS tags on graph- and transition-based parsers suggests that…

Computation and Language · Computer Science 2022-10-28 Alberto Muñoz-Ortiz , Mark Anderson , David Vilares , Carlos Gómez-Rodríguez

In practical scenario, relation extraction needs to first identify entity pairs that have relation and then assign a correct relation class. However, the number of non-relation entity pairs in context (negative instances) usually far…

Computation and Language · Computer Science 2019-06-24 Wei Ye , Bo Li , Rui Xie , Zhonghao Sheng , Long Chen , Shikun Zhang

Choosing an appropriate tokenization scheme is often a bottleneck in low-resource cross-lingual transfer. To understand the downstream implications of text representation choices, we perform a comparative analysis on language models having…

Computation and Language · Computer Science 2023-10-13 Md Mushfiqur Rahman , Fardin Ahsan Sakib , Fahim Faisal , Antonios Anastasopoulos

Part of speech (POS) tagging is a familiar NLP task. State of the art taggers routinely achieve token-level accuracies of over 97% on news body text, evidence that the problem is well understood. However, the register of English news…

Computation and Language · Computer Science 2021-09-17 Adrian Benton , Hanyang Li , Igor Malioutov

The advancement of Large Language Models (LLMs) has significantly impacted biomedical Natural Language Processing (NLP), enhancing tasks such as named entity recognition, relation extraction, event extraction, and text classification. In…

Computation and Language · Computer Science 2025-03-04 Zaifu Zhan , Shuang Zhou , Huixue Zhou , Jiawen Deng , Yu Hou , Jeremy Yeung , Rui Zhang

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han