Related papers: Permutation patterns in genome rearrangement probl…

We address the problem of finding the minimal number of block interchanges (exchange of two intervals) required to transform a duplicated linear genome into a tandem duplicated linear genome. We provide a formula for the distance as well as…

The study of patterns in permutations in a very active area of current research. Klazar defined and studied an analogous notion of pattern for set partitions. We continue this work, finding exact formulas for the number of set partitions…

Pattern avoidance classes of permutations that cannot be expressed as unions of proper subclasses can be described as the set of subpermutations of a single bijection. In the case that this bijection is a permutation of the natural numbers…

In the evolution of a genome, the gene sequence is sometimes rearranged, for example by transposition of two adjacent gene blocks. In biocombinatorics, one tries to reconstruct these rearrangement incidents from the resulting permutation.…

Different ways to describe a permutation, as a sequence of integers, or a product of Coxeter generators, or a tree, give different choices to define a simple permutation. We recollect few of them, define new types of simple permutations,…

We survey the known results about simple permutations. In particular, we present a number of recent enumerative and structural results pertaining to simple permutations, and show how simple permutations play an important role in the study…

The classical rearrangement inequality provides bounds for the sum of products of two sequences under permutations of terms and show that similarly ordered sequences provide the largest value whereas opposite ordered sequences provide the…

We examine the number of cycles of length k in a permutation, as a function on the symmetric group. We write it explicitly as a combination of characters of irreducible representations. This allows to study formation of long cycles in the…

During the course of evolution, an organism's genome can undergo changes that affect the large-scale structure of the genome. These changes include gene gain, loss, duplication, chromosome fusion, fission, and rearrangement. When gene gain…

We study permutations on n elements preserving orientation (parity) of every subset of size k. We describe all groups of these permutations. Unexpectedly, these groups (except for some special cases) are either trivial, cyclic or dihedral.…

We introduce a permutation analogue of the celebrated Szemeredi Regularity Lemma, and derive a number of consequences. This tool allows us to provide a structural description of permutations which avoid a specified pattern, a result that…

We introduce the notion of crossings and nestings of a permutation. We compute the generating function of permutations with a fixed number of weak exceedances, crossings and nestings. We link alignments and permutation patterns to these…

For each integer k >= 2, let F(k) denote the largest n for which there exists a permutation \sigma \in S_n, all of whose patterns of length k are distinct. We prove that F(k) = k + \lfloor \sqrt{2k-3} \rfloor + e_k, where e_k \in {-1,0} for…

A sample of n generic points in the xy-plane defines a permutation that relates their ranks along the two axes. Every subset of k points similarly defines a pattern, which occurs in that permutation. The number of occurrences of small…

We compute the number of ways a given permutation can be written as a product of exactly $k$ transpositions. We express this number as a linear combination of explicit geometric sequences, with coefficients which can be computed in many…

Every k entries in a permutation can have one of k! different relative orders, called patterns. How many times does each pattern occur in a large random permutation of size n? The distribution of this k!-dimensional vector of pattern…

We consider a large family of equivalence relations on permutations in Sn that generalise those discovered by Knuth in his study of the Robinson-Schensted correspondence. In our most general setting, two permutations are equivalent if one…

The partial transpose of a block matrix M is the matrix obtained by transposing the blocks of M independently. We approach the notion of partial transpose from a combinatorial point of view. In this perspective, we solve some basic…

We count the number of occurrences of restricted patterns of length 3 in permutations with respect to length and the number of cycles. The main tool is a bijection between permutations in standard cycle form and weighted Motzkin paths.

A permutation of n letters is k-prolific if each (n-k)-subset of the letters in its one-line notation forms a unique pattern. We present a complete characterization of k-prolific permutations for each k, proving that k-prolific permutations…