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We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…
We consider the $k$-Center problem and some generalizations. For $k$-Center a set of $k$ center vertices needs to be found in a graph $G$ with edge lengths, such that the distance from any vertex of $G$ to its nearest center is minimized.…
The Set Packing problem is, given a collection of sets $\mathcal{S}$ over a ground set $\mathcal{U}$, to find a maximum collection of sets that are pairwise disjoint. The problem is among the most fundamental NP-hard optimization problems…
We investigate the problem of constructing fault-tolerant bases in matroids. Given a matroid M and a redundancy parameter k, a k-fault-tolerant basis is a minimum-size set of elements such that, even after the removal of any k elements, the…
To enumerate 3-manifold triangulations with a given property, one typically begins with a set of potential face pairing graphs (also known as dual 1-skeletons), and then attempts to flesh each graph out into full triangulations using an…
We propose a new (theoretical) computational model for the study of massive data processing with limited computational resources. Our model measures the complexity of reading the very large data sets in terms of the data size N and analyzes…
We study the well-established problem of finding an optimal routing of unsplittable flows in a graph. While by now there is an extensive body of work targeting the problem on graph classes such as paths and trees, we aim at using the…
Synchronous dynamic systems are well-established models that have been used to capture a range of phenomena in networks, including opinion diffusion, spread of disease and product adoption. We study the three most notable problems in…
Given a graph G and an integer k, the objective of the $\Pi$-Contraction problem is to check whether there exists at most k edges in G such that contracting them in G results in a graph satisfying the property $\Pi$. We investigate the…
A framework consists of an undirected graph $G$ and a matroid $M$ whose elements correspond to the vertices of $G$. Recently, Fomin et al. [SODA 2023] and Eiben et al. [ArXiV 2023] developed parameterized algorithms for computing paths of…
We consider the following problem called the $k$-Chinese Postman Problem ($k$-CPP): given a connected edge-weighted graph $G$ and integers $p$ and $k$, decide whether there are at least $k$ closed walks such that every edge of $G$ is…
We study the \textsc{Labeled Contractibility} problem, where the input consists of two vertex-labeled graphs $G$ and $H$, and the goal is to determine whether $H$ can be obtained from $G$ via a sequence of edge contractions. Lafond and…
In the Colored Clustering problem, one is asked to cluster edge-colored (hyper-)graphs whose colors represent interaction types. More specifically, the goal is to select as many edges as possible without choosing two edges that share an…
Planning is a notoriously difficult computational problem of high worst-case complexity. Researchers have been investing significant efforts to develop heuristics or restrictions to make planning practically feasible. Case-based planning is…
In the Disjoint Shortest Paths problem one is given a graph $G$ and a set $\mathcal{T}=\{(s_1,t_1),\dots,(s_k,t_k)\}$ of $k$ vertex pairs. The question is whether there exist vertex-disjoint paths $P_1,\dots,P_k$ in $G$ so that each $P_i$…
The NP-hard general factor problem asks, given a graph and for each vertex a list of integers, whether the graph has a spanning subgraph where each vertex has a degree that belongs to its assigned list. The problem remains NP-hard even if…
We perform a fundamental investigation of the complexity of conjunctive query evaluation from the perspective of parameterized complexity. We classify sets of boolean conjunctive queries according to the complexity of this problem. Previous…
We identify and study relevant structural parameters for the problem PerfMatch of counting perfect matchings in a given input graph $G$. These generalize the well-known tractable planar case, and they include the genus of $G$, its apex…
The Induced Graph Matching problem asks to find k disjoint induced subgraphs isomorphic to a given graph H in a given graph G such that there are no edges between vertices of different subgraphs. This problem generalizes the classical…
For a phylogenetic tree, the phylogenetic diversity of a set A of taxa is the total weight of edges on paths to A. Finding small sets of maximal diversity is crucial for conservation planning, as it indicates where limited resources can be…